This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
Anticodon = GTT
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.483934 (2 seq.)
>ENV08001267
ABMV01107907
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
107
34
-
Asn
GTT
[ENA]
¡û
>SRA1001300
SRR001063.48375
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
107
34
-
Asn
GTT
[SRA]
Identical group No.483936 (1 seq.)
>SRA1001317
SRR001063.115028
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
74
-1
-
Asn
GTT
[SRA]
Identical group No.483948 (4 seq.)
>WENV181170621
OEIV010066024
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
355
280
-
Asn
GTT
[ENA]
¢þ
>ENV08001241
ABMV01040971
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
105
30
-
Asn
GTT
[ENA]
¡û
>W1911708727
QOZR01000001
Alphaproteobacteria
Rhodospirillaceae bacterium SYSU D60014 [QOZR]
363080
363005
-
Asn
GTT
[ENA]
¡û
>SRA1001357
SRR001063.310948
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
105
30
-
Asn
GTT
[SRA]
Identical group No.787958 (4 seq.)
>ENV08001255
ABMV01082835
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
28
100
+
Asn
GTT
[ENA]
¡û
>WENV170015030
AZIC01018452
[AZIC] marine sediment metagenome; sample MGS-MES from oil contaminated site at the harbour of Messina (Sicily, Italy)
326
254
-
Asn
GTT
[ENA]
¢þ
>WENV170680394
LFCJ01010428
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
5339
5411
+
Asn
GTT
[ENA]
¢þ
>SRA1001359
SRR001063.324462
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
28
100
+
Asn
GTT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK