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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
Anticodon = TCC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.787955 (5 seq.)
>W1711581570
MNUG01000035
Alphaproteobacteria
Alphaproteobacteria bacterium CG1_02_46_17 [MNUG]
1265
1338
+
Gly
TCC
[ENA]
¡û
>WENV180254824
OBEQ010669234
[OBEQ] groundwater metagenome; groundwater
160
87
-
Gly
TCC
[ENA]
¢þ
>ENV08001252
ABMV01072535
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
16
87
+
Gly
TCC
[ENA]
¡û
>WENV170596695
FUIF01009718
[FUIF] marine metagenome; marine
1920
1993
+
Gly
TCC
[ENA]
¢þ
>SRA1001313
SRR001063.97927
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
16
87
+
Gly
TCC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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