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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
Anticodon = TGG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.300174 (2 seq.)
>ENV08001258
ABMV01093584
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
81
7
-
Pro
TGG
[ENA]
¡û
>SRA1001291
SRR001063.8522
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
81
7
-
Pro
TGG
[SRA]
Identical group No.300176 (2 seq.)
>ENV08001236
ABMV01033342
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
107
31
-
Pro
TGG
[ENA]
¡û
>SRA1001308
SRR001063.87494
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
107
31
-
Pro
TGG
[SRA]
Identical group No.300184 (2 seq.)
>ENV08001270
ABMV01135385
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
96
22
-
Pro
TGG
[ENA]
¡û
>SRA1001339
SRR001063.227401
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
96
22
-
Pro
TGG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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