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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
Anticodon = TTC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.244396 (2 seq.)
>ENV08001238
ABMV01035226
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
103
26
-
Glu
TTC
[ENA]
¡û
>SRA1001351
SRR001063.265993
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
103
26
-
Glu
TTC
[SRA]
Identical group No.483943 (2 seq.)
>ENV08001222
ABMV01004113
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
115
43
-
Glu
TTC
[ENA]
¡û
>SRA1001340
SRR001063.227867
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
115
43
-
Glu
TTC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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