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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
Anticodon = TTG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.672178 (2 seq.)
>ENV08001234
ABMV01032877
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
6
79
+
Gln
TTG
[ENA]
¡û
>SRA1001316
SRR001063.112375
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
6
79
+
Gln
TTG
[SRA]
Identical group No.787953 (2 seq.)
>ENV08001225
ABMV01017794
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
16
88
+
Gln
TTG
[ENA]
¡û
>SRA1001298
SRR001063.42244
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
16
88
+
Gln
TTG
[SRA]
Identical group No.788318 (2 seq.)
>ENV08001231
ABMV01026701
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
112
40
-
Pseudo
TTG
[ENA]
¡û
>SRA1001344
SRR001063.240119
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
112
40
-
Gln
TTG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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