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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
Anticodon = TTT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.483946 (2 seq.)
>ENV08001253
ABMV01072934
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
84
12
-
Lys
TTT
[ENA]
¡û
>SRA1001354
SRR001063.289756
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
84
12
-
Lys
TTT
[SRA]
Identical group No.483950 (2 seq.)
>ENV08001230
ABMV01025965
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
17
91
+
Lys
TTT
[ENA]
¡û
>SRA1001360
SRR001063.324772
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
17
91
+
Lys
TTT
[SRA]
Identical group No.672177 (2 seq.)
>ENV08001281
ABMV01210158
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
93
21
-
Lys
TTT
[ENA]
¡û
>SRA1001311
SRR001063.91104
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
93
21
-
Lys
TTT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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