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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Stromatolites, microbial fraction from Rios Mesquites microbiolite in Cuatro Cienagas, Mexico (SRP000135)
Anticodon = CAG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.113977 (36 seq.)
>W1711190039
LWRO01000011
Cyanobacteriota
Geitlerinema sp. BBD BBD 1991-9 [LWRO]
84108
84025
-
Leu
CAG
[ENA]
¡û
>W1711509523
MKZR01000001
Cyanobacteriota
Moorena producens NAK12DEC93-3La [MKZR]
4703271
4703354
+
Leu
CAG
[ENA]
¡û
>W1711509555
MKZS01000001
Cyanobacteriota
Moorena bouillonii PNG5-198 [MKZS]
2398579
2398662
+
Leu
CAG
[ENA]
¡û
>C171064204
CP017599
Cyanobacteriota
Moorena producens PAL-8-15-08-1 [CP017599]
5714669
5714752
+
Leu
CAG
-
¡û
>W131036355
ALVN01000001
Cyanobacteriota
Leptolyngbya sp. PCC 7375 [ALVN]
5472090
5472007
-
Leu
CAG
[ENA]
¡û
>W131058619
ANFQ01000228
Cyanobacteriota
Baaleninema simplex PCC 7105 [ANFQ]
8149
8066
-
Leu
CAG
[ENA]
¡û
>C025569
CP000393
Actinomycetota
Trichodesmium erythraeum [CP000393]
4846955
4846872
-
Leu
CAG
[Ensembl]
¡û
>w021623
AAVU01000009
Cyanobacteriota
Lyngbya sp. PCC 8106 [AAVU]
38576
38490
-
Leu
CAG
[ENA]
¡û
>W141004295
AFXD01000027
Cyanobacteriota
Arthrospira platensis C1 [AFXD]
149762
149847
+
Leu
CAG
[ENA]
¡û
>W141038436
ALVV02000006
Cyanobacteriota
Leptolyngbya sp. PCC 6406 [ALVV]
29685
29772
+
Leu
CAG
[ENA]
¡û
>W141091949
AUZM01000024
Cyanobacteriota
Lyngbya aestuarii BL J [AUZM]
50361
50444
+
Leu
CAG
[ENA]
¡û
>W141139163
AWNH01000078
Cyanobacteriota
Leptolyngbya sp. Heron Island J [AWNH]
25324
25407
+
Leu
CAG
[ENA]
¡û
>W08011369
ABVE01000009
Cyanobacteriota
Gloeothece verrucosa PCC 7822 [ABVE]
145226
145143
-
Leu
CAG
[ENA]
¡û
>W141240132
CAFN01000268
Cyanobacteriota
Limnospira indica PCC 8005 [CAFN]
5088
5003
-
Leu
CAG
[ENA]
¡û
>ENV08000526
ABME01037242
Stromatolite metagenome; microbial fraction from Rios Mesquites microbiolite in Cuatro Cienagas, Mexico
11
97
+
Leu
CAG
[ENA]
¡û
>C181169656
CP028914
Cyanobacteriota
Arthrospira sp. TJSD092 [CP028914]
996596
996681
+
Leu
CAG
-
¡û
>W09100657
AABK04000005
Cyanobacteriota
Trichodesmium erythraeum IMS101 [AABK]
36009
35926
-
Leu
CAG
[ENA]
¡û
>W09113163
ABYK01000018
Cyanobacteriota
Limnospira maxima CS-328 [ABYK]
2521
2606
+
Leu
CAG
[ENA]
¡û
>W1910194344
CZDF01000188
Cyanobacteriota
Planktothrix tepida PCC 9214 [CZDF]
112554
112637
+
Leu
CAG
[ENA]
¡û
>W1911204883
NRIU01002591
Cyanobacteriota
Geitlerinema sp. FC II [NRIU]
11822
11905
+
Leu
CAG
[ENA]
¡û
>SRA1000533
SRR001043.53372
Stromatolites, microbial fraction from Rios Mesquites microbiolite in Cuatro Cienagas, Mexico (SRP000135)
11
97
+
Leu
CAG
[SRA]
>W1810185574
PKGD01000093
Cyanobacteriota
Arthrospira sp. O9.13F [PKGD]
1320
1405
+
Leu
CAG
[ENA]
¡û
>W1810185577
PKGD01000172
Cyanobacteriota
Arthrospira sp. O9.13F [PKGD]
6596
6511
-
Leu
CAG
[ENA]
¡û
>W1810366415
PVWK01000117
Cyanobacteriota
Stenomitos frigidus ULC18 [PVWK]
38555
38638
+
Leu
CAG
[ENA]
¡û
>W10111336
ADDH01000062
Cyanobacteriota
Limnospira indica PCC 8005 [ADDH]
42355
42440
+
Leu
CAG
[ENA]
¡û
>C11106712
CP002198
Cyanobacteriota
Gloeothece verrucosa PCC 7822 [CP002198]
1189506
1189589
+
Leu
CAG
[Ensembl]
¡û
>C11106756
CP002198
Cyanobacteriota
Gloeothece verrucosa PCC 7822 [CP002198]
1189506
1189589
+
Leu
CAG
[Ensembl]
¡û
>W11114279
ADDH01000062
Cyanobacteriota
Limnospira indica PCC 8005 [ADDH]
42355
42440
+
Leu
CAG
[ENA]
¡û
>W11143177
AEPQ01000238
Cyanobacteriota
Moorena producens 3L [AEPQ]
143170
143087
-
Leu
CAG
[ENA]
¡û
>W1511564096
LADK01000405
Cyanobacteriota
Trichodesmium erythraeum 21-75 [LADK]
15924
16007
+
Leu
CAG
[ENA]
¡û
>W1511582914
LATL02000241
Cyanobacteriota
Limnoraphis robusta CS-951 [LATL]
24604
24687
+
Leu
CAG
[ENA]
¡û
>W1511585672
LAYT01000224
Cyanobacteriota
Arthrospira sp. TJSD091 [LAYT]
52250
52335
+
Leu
CAG
[ENA]
¡û
>C161049401
CP013008
Cyanobacteriota
Arthrospira platensis YZ [CP013008]
4500361
4500276
-
Leu
CAG
-
¡û
>C161103159
FO818640
Cyanobacteriota
Limnospira indica PCC 8005 [FO818640]
4625169
4625084
-
Leu
CAG
-
¡û
>C131010427
CP003945
Cyanobacteriota
Halothece sp. PCC 7418 [CP003945]
1737805
1737722
-
Leu
CAG
[Ensembl]
¡û
>W1610992158
LWRO01000011
Cyanobacteriota
Geitlerinema sp. BBD BBD 1991-9 [LWRO]
84108
84025
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK