This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Stromatolites, microbial fraction from Rios Mesquites microbiolite in Cuatro Cienagas, Mexico (SRP000135)
Anticodon = CAG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.74423 (72 seq.)
>W1711190039
LWRO01000011
Cyanobacteriota
Geitlerinema sp. BBD BBD 1991-9 [LWRO]
84108
84025
-
Leu
CAG
[ENA]
¡û
>W1711335876
MBRF01000008
Cyanobacteriota
Limnothrix sp. P13C2 [MBRF]
110034
109951
-
Leu
CAG
[ENA]
¡û
>W1711509523
MKZR01000001
Cyanobacteriota
Moorena producens NAK12DEC93-3La [MKZR]
4703271
4703354
+
Leu
CAG
[ENA]
¡û
>W1711509555
MKZS01000001
Cyanobacteriota
Moorena bouillonii PNG5-198 [MKZS]
2398579
2398662
+
Leu
CAG
[ENA]
¡û
>W1711584842
MNYZ01000002
Cyanobacteriota
Oscillatoriales cyanobacterium CG2_30_40_61 [MNYZ]
39324
39241
-
Leu
CAG
[ENA]
¡û
>C171064204
CP017599
Cyanobacteriota
Moorena producens PAL-8-15-08-1 [CP017599]
5714669
5714752
+
Leu
CAG
-
¡û
>W131036355
ALVN01000001
Cyanobacteriota
Leptolyngbya sp. PCC 7375 [ALVN]
5472090
5472007
-
Leu
CAG
[ENA]
¡û
>W131058619
ANFQ01000228
Cyanobacteriota
Baaleninema simplex PCC 7105 [ANFQ]
8149
8066
-
Leu
CAG
[ENA]
¡û
>C025190
BA000022
Cyanobacteriota
Synechocystis sp. PCC 6803 [BA000022]
3333097
3333014
-
Leu
CAG
[Ensembl]
¡û
>C025569
CP000393
Actinomycetota
Trichodesmium erythraeum [CP000393]
4846955
4846872
-
Leu
CAG
[Ensembl]
¡û
>w021623
AAVU01000009
Cyanobacteriota
Lyngbya sp. PCC 8106 [AAVU]
38576
38490
-
Leu
CAG
[ENA]
¡û
>W141004295
AFXD01000027
Cyanobacteriota
Arthrospira platensis C1 [AFXD]
149762
149847
+
Leu
CAG
[ENA]
¡û
>W141038436
ALVV02000006
Cyanobacteriota
Leptolyngbya sp. PCC 6406 [ALVV]
29685
29772
+
Leu
CAG
[ENA]
¡û
>W141051326
AMZV01000050
Cyanobacteriota
Synechocystis sp. PCC 6714 [AMZV]
93068
92982
-
Leu
CAG
[ENA]
¡û
>W141067384
ASAK01000002
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 126/8 [ASAK]
53265
53348
+
Leu
CAG
[ENA]
¡û
>W141091949
AUZM01000024
Cyanobacteriota
Lyngbya aestuarii BL J [AUZM]
50361
50444
+
Leu
CAG
[ENA]
¡û
>W141096700
AVFS01000032
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 15 [AVFS]
9397
9314
-
Leu
CAG
[ENA]
¡û
>W141096740
AVFT01000018
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 34 [AVFT]
8107
8190
+
Leu
CAG
[ENA]
¡û
>W141096779
AVFU01000062
Cyanobacteriota
Planktothrix mougeotii NIVA-CYA 405 [AVFU]
8110
8193
+
Leu
CAG
[ENA]
¡û
>W141096819
AVFV01000108
Cyanobacteriota
Planktothrix prolifica NIVA-CYA 406 [AVFV]
14472
14555
+
Leu
CAG
[ENA]
¡û
>W141096871
AVFW01000152
Cyanobacteriota
Planktothrix rubescens NIVA-CYA 407 [AVFW]
62892
62809
-
Leu
CAG
[ENA]
¡û
>W141096887
AVFX01000038
Cyanobacteriota
Planktothrix prolifica NIVA-CYA 540 [AVFX]
58090
58173
+
Leu
CAG
[ENA]
¡û
>W141096930
AVFY01000060
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 56/3 [AVFY]
136550
136633
+
Leu
CAG
[ENA]
¡û
>W141096961
AVFZ01000105
Cyanobacteriota
Planktothrix prolifica NIVA-CYA 98 [AVFZ]
62690
62607
-
Leu
CAG
[ENA]
¡û
>W141139163
AWNH01000078
Cyanobacteriota
Leptolyngbya sp. Heron Island J [AWNH]
25324
25407
+
Leu
CAG
[ENA]
¡û
>W08011369
ABVE01000009
Cyanobacteriota
Gloeothece verrucosa PCC 7822 [ABVE]
145226
145143
-
Leu
CAG
[ENA]
¡û
>W141240132
CAFN01000268
Cyanobacteriota
Limnospira indica PCC 8005 [CAFN]
5088
5003
-
Leu
CAG
[ENA]
¡û
>ENV08000526
ABME01037242
Stromatolite metagenome; microbial fraction from Rios Mesquites microbiolite in Cuatro Cienagas, Mexico
11
97
+
Leu
CAG
[ENA]
¡û
>WENV170002262
AGSF01001915
[AGSF] microbial mat metagenome; purple microbial (photo and chemo synthetic) mats found in low oxygen high sulfur sink holes
394
477
+
Leu
CAG
[ENA]
¢þ
>WENV170984311
MWVV01231791
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
144
227
+
Leu
CAG
[ENA]
¢þ
>C181160848
CP028094
Cyanobacteriota
Synechocystis sp. IPPAS B-1465 [CP028094]
3333937
3333854
-
Leu
CAG
-
¡û
>C181169656
CP028914
Cyanobacteriota
Arthrospira sp. TJSD092 [CP028914]
996596
996681
+
Leu
CAG
-
¡û
>C191000795
AP017991
Cyanobacteriota
Planktothrix agardhii NIES-204 [AP017991]
2918723
2918806
+
Leu
CAG
-
¡û
>W09100657
AABK04000005
Cyanobacteriota
Trichodesmium erythraeum IMS101 [AABK]
36009
35926
-
Leu
CAG
[ENA]
¡û
>W09113163
ABYK01000018
Cyanobacteriota
Limnospira maxima CS-328 [ABYK]
2521
2606
+
Leu
CAG
[ENA]
¡û
>W1910175478
BJCD01000049
Cyanobacteriota
Planktothrix agardhii CCAP 1459/11A [BJCD]
73783
73700
-
Leu
CAG
[ENA]
¡û
>W1910194154
CZCS01000181
Cyanobacteriota
Planktothrix paucivesiculata PCC 9631 [CZCS]
27576
27659
+
Leu
CAG
[ENA]
¡û
>W1910194191
CZCT02000096
Cyanobacteriota
Planktothrix sp. PCC 11201 [CZCT]
51142
51225
+
Leu
CAG
[ENA]
¡û
>W1910194241
CZCU01000138
Cyanobacteriota
Planktothrix serta PCC 8927 [CZCU]
27302
27219
-
Leu
CAG
[ENA]
¡û
>W1910194291
CZCZ01000006
Cyanobacteriota
Planktothrix rubescens 7821 [CZCZ]
433820
433737
-
Leu
CAG
[ENA]
¡û
>W1910194344
CZDF01000188
Cyanobacteriota
Planktothrix tepida PCC 9214 [CZDF]
112554
112637
+
Leu
CAG
[ENA]
¡û
>W1910617509
LIRO01000017
Cyanobacteriota
Limnothrix sp. PR1529 [LIRO]
2428
2345
-
Leu
CAG
[ENA]
¡û
>W1910695509
MDVL01000819
Cyanobacteriota
Euhalothece sp. KZN 001 KZN 001 [MDVL]
9671
9754
+
Leu
CAG
[ENA]
¡û
>W1911204883
NRIU01002591
Cyanobacteriota
Geitlerinema sp. FC II [NRIU]
11822
11905
+
Leu
CAG
[ENA]
¡û
>SRA1000533
SRR001043.53372
Stromatolites, microbial fraction from Rios Mesquites microbiolite in Cuatro Cienagas, Mexico (SRP000135)
11
97
+
Leu
CAG
[SRA]
>W1810185574
PKGD01000093
Cyanobacteriota
Arthrospira sp. O9.13F [PKGD]
1320
1405
+
Leu
CAG
[ENA]
¡û
>W1810185577
PKGD01000172
Cyanobacteriota
Arthrospira sp. O9.13F [PKGD]
6596
6511
-
Leu
CAG
[ENA]
¡û
>W1810366415
PVWK01000117
Cyanobacteriota
Stenomitos frigidus ULC18 [PVWK]
38555
38638
+
Leu
CAG
[ENA]
¡û
>C151027446
CP007542
Cyanobacteriota
Synechocystis sp. PCC 6714 [CP007542]
626890
626976
+
Leu
CAG
[Ensembl]
¡û
>W10111336
ADDH01000062
Cyanobacteriota
Limnospira indica PCC 8005 [ADDH]
42355
42440
+
Leu
CAG
[ENA]
¡û
>C11106712
CP002198
Cyanobacteriota
Gloeothece verrucosa PCC 7822 [CP002198]
1189506
1189589
+
Leu
CAG
[Ensembl]
¡û
>C11106756
CP002198
Cyanobacteriota
Gloeothece verrucosa PCC 7822 [CP002198]
1189506
1189589
+
Leu
CAG
[Ensembl]
¡û
>W11114279
ADDH01000062
Cyanobacteriota
Limnospira indica PCC 8005 [ADDH]
42355
42440
+
Leu
CAG
[ENA]
¡û
>W1511400830
JTHE01000274
Cyanobacteriota
Lyngbya confervoides BDU141951 [JTHE]
1764815
1764898
+
Leu
CAG
[ENA]
¡û
>W1511401851
JTJD01000271
Cyanobacteriota
Aphanocapsa montana BDHKU210001 [JTJD]
1768733
1768816
+
Leu
CAG
[ENA]
¡û
>C11122301
AP012205
Cyanobacteriota
Synechocystis sp. PCC 6803 GT-S [AP012205]
3331913
3331830
-
Leu
CAG
[Ensembl]
¡û
>W11143177
AEPQ01000238
Cyanobacteriota
Moorena producens 3L [AEPQ]
143170
143087
-
Leu
CAG
[ENA]
¡û
>W1511564096
LADK01000405
Cyanobacteriota
Trichodesmium erythraeum 21-75 [LADK]
15924
16007
+
Leu
CAG
[ENA]
¡û
>W1511582914
LATL02000241
Cyanobacteriota
Limnoraphis robusta CS-951 [LATL]
24604
24687
+
Leu
CAG
[ENA]
¡û
>W1511585672
LAYT01000224
Cyanobacteriota
Arthrospira sp. TJSD091 [LAYT]
52250
52335
+
Leu
CAG
[ENA]
¡û
>C121000611
AP012276
Cyanobacteriota
Synechocystis sp. PCC 6803 substr. GT-I [AP012276]
3330814
3330731
-
Leu
CAG
[Ensembl]
¡û
>C121000650
AP012277
Cyanobacteriota
Synechocystis sp. PCC 6803 substr. PCC-N [AP012277]
3330913
3330830
-
Leu
CAG
[Ensembl]
¡û
>C121000689
AP012278
Cyanobacteriota
Synechocystis sp. PCC 6803 substr. PCC-P [AP012278]
3330924
3330841
-
Leu
CAG
[Ensembl]
¡û
>C161046060
CP012832
Cyanobacteriota
Synechocystis sp. PCC 6803 [CP012832]
3330006
3329923
-
Leu
CAG
-
¡û
>C161049401
CP013008
Cyanobacteriota
Arthrospira platensis YZ [CP013008]
4500361
4500276
-
Leu
CAG
-
¡û
>C161103159
FO818640
Cyanobacteriota
Limnospira indica PCC 8005 [FO818640]
4625169
4625084
-
Leu
CAG
-
¡û
>C131010427
CP003945
Cyanobacteriota
Halothece sp. PCC 7418 [CP003945]
1737805
1737722
-
Leu
CAG
[Ensembl]
¡û
>C131000632
AP012495
Bacillota
Bacillus subtilis [AP012495]
4678937
4679020
+
Leu
CAG
[Ensembl]
¡û
>C131002606
CP003265
Cyanobacteriota
Synechocystis sp. PCC 6803 [CP003265]
3330365
3330282
-
Leu
CAG
-
¡û
>C131004824
CP003620
Cyanobacteriota
Crinalium epipsammum PCC 9333 [CP003620]
3994064
3993981
-
Leu
CAG
[Ensembl]
¡û
>W1610992158
LWRO01000011
Cyanobacteriota
Geitlerinema sp. BBD BBD 1991-9 [LWRO]
84108
84025
-
Leu
CAG
[ENA]
¡û
>W1611066583
MBRF01000008
Cyanobacteriota
Limnothrix sp. P13C2 [MBRF]
110034
109951
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK