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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Stromatolites, microbial fraction from Rios Mesquites microbiolite in Cuatro Cienagas, Mexico (SRP000135)
Anticodon = CCC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.658411 (9 seq.)
>W1711979755
NDGV01000023
Cyanobacteriota
cyanobacterium TDX16 [NDGV]
48030
47959
-
Gly
CCC
[ENA]
¡û
>ENV08000531
ABME01054906
Stromatolite metagenome; microbial fraction from Rios Mesquites microbiolite in Cuatro Cienagas, Mexico
101
30
-
Gly
CCC
[ENA]
¡û
>W1911638338
PVWL01000090
Cyanobacteriota
Cyanosarcina burmensis burmensis CCALA 770 [PVWL]
27647
27576
-
Gly
CCC
[ENA]
¡û
>W1911638365
PVWM01000096
Cyanobacteriota
Chroococcidiopsis cubana CCALA 043 [PVWM]
12668
12739
+
Gly
CCC
[ENA]
¡û
>W1911641161
PYCI01000009
Cyanobacteriota
Chroococcidiopsis sp. CCALA 051 [PYCI]
5035
4964
-
Gly
CCC
[ENA]
¡û
>W1911741996
QVFW01000007
Cyanobacteriota
Scytonema millei VB511283 [QVFW]
214563
214634
+
Gly
CCC
[ENA]
¡û
>SRA1000540
SRR001043.83790
Stromatolites, microbial fraction from Rios Mesquites microbiolite in Cuatro Cienagas, Mexico (SRP000135)
101
30
-
Gly
CCC
[SRA]
>W1511401774
JTJC01000084
Cyanobacteriota
Scytonema millei VB511283 [JTJC]
1516345
1516274
-
Gly
CCC
[ENA]
¡û
>C131004519
CP003597
Cyanobacteriota
Chroococcidiopsis thermalis PCC 7203 [CP003597]
4857150
4857221
+
Gly
CCC
[Ensembl]
¡û
Identical group No.819488 (2 seq.)
>ENV08000521
ABME01019277
Stromatolite metagenome; microbial fraction from Rios Mesquites microbiolite in Cuatro Cienagas, Mexico
18
89
+
Gly
CCC
[ENA]
¡û
>SRA1000528
SRR001043.13211
Stromatolites, microbial fraction from Rios Mesquites microbiolite in Cuatro Cienagas, Mexico (SRP000135)
18
89
+
Gly
CCC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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