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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Stromatolites, microbial fraction from Rios Mesquites microbiolite in Cuatro Cienagas, Mexico (SRP000135)
Anticodon = CGT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.597764 (2 seq.)
>ENV08000534
ABME01086159
Stromatolite metagenome; microbial fraction from Rios Mesquites microbiolite in Cuatro Cienagas, Mexico
12
87
+
Thr
CGT
[ENA]
¡û
>SRA1000530
SRR001043.33858
Stromatolites, microbial fraction from Rios Mesquites microbiolite in Cuatro Cienagas, Mexico (SRP000135)
12
87
+
Thr
CGT
[SRA]
Identical group No.658412 (43 seq.)
>W131036022
AJUB01000017
Cyanobacteriota
Leptolyngbyaceae cyanobacterium JSC-12 JSC-12 [AJUB]
33014
32943
-
Thr
CGT
[ENA]
¡û
>W131036434
ALVP01000045
Cyanobacteriota
Nodosilinea nodulosa PCC 7104 [ALVP]
13374
13303
-
Thr
CGT
[ENA]
¡û
>W131036517
ALVS01000088
Cyanobacteriota
Fischerella sp. PCC 9339 [ALVS]
179285
179214
-
Thr
CGT
[ENA]
¡û
>W131036561
ALVW01000020
Cyanobacteriota
Mastigocladopsis repens PCC 10914 [ALVW]
76774
76845
+
Thr
CGT
[ENA]
¡û
>W1711577083
MNPM01000005
Cyanobacteriota
Mastigocladus laminosus 74 [MNPM]
120729
120658
-
Thr
CGT
[ENA]
¡û
>W1711666725
MRCF01000029
Cyanobacteriota
Scytonema sp. HK-05 [MRCF]
37513
37584
+
Thr
CGT
[ENA]
¡û
>W1711666778
MRCG01000034
Cyanobacteriota
Phormidium tenue NIES-30 [MRCG]
39291
39362
+
Thr
CGT
[ENA]
¡û
>W1711979758
NDGV01000026
Cyanobacteriota
cyanobacterium TDX16 [NDGV]
39520
39591
+
Thr
CGT
[ENA]
¡û
>C171127285
CP021983
Cyanobacteriota
Halomicronema hongdechloris C2206 [CP021983]
549448
549377
-
Thr
CGT
-
¡û
>W141021247
AJLJ01000065
Cyanobacteriota
Fischerella muscicola SAG 1427-1 = PCC 73103 [AJLJ]
66807
66878
+
Thr
CGT
[ENA]
¡û
>W141021390
AJLM01000038
Cyanobacteriota
Chlorogloeopsis fritschii PCC 9212 [AJLM]
16828
16899
+
Thr
CGT
[ENA]
¡û
>W141021450
AJLN01000117
Cyanobacteriota
Chlorogloeopsis fritschii PCC 6912 [AJLN]
45319
45248
-
Thr
CGT
[ENA]
¡û
>W141038506
ALVX01000017
Cyanobacteriota
Fischerella sp. PCC 9431 [ALVX]
478457
478528
+
Thr
CGT
[ENA]
¡û
>W141260250
CBZS010000028
Cyanobacteriota
Richelia intracellularis [CBZS]
25950
25879
-
Thr
CGT
[ENA]
¡û
>ENV08000535
ABME01088393
Stromatolite metagenome; microbial fraction from Rios Mesquites microbiolite in Cuatro Cienagas, Mexico
8
79
+
Thr
CGT
[ENA]
¡û
>WENV183702491
PDVI01000577
[PDVI] alkali sediment metagenome; glacial lake sediment
1947
1876
-
Thr
CGT
[ENA]
¢þ
>WENV183747989
PPFU01005533
[PPFU] hypolithon metagenome; Antarctic Hypolithon
648
719
+
Thr
CGT
[ENA]
¢þ
>WENV170661837
JXWV01131884
[JXWV] soil metagenome; rice field; organic FYM Plot
236
307
+
Thr
CGT
[ENA]
¢þ
>WENV170984719
MWVV01405314
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
347
276
-
Thr
CGT
[ENA]
¢þ
>WENV170998720
MWWJ01088216
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
348
277
-
Thr
CGT
[ENA]
¢þ
>C181004993
AP018280
Cyanobacteriota
Calothrix sp. NIES-4101 [AP018280]
3063277
3063206
-
Thr
CGT
-
¡û
>W141805265
JPKF01000001
Cyanobacteriota
Calothrix sp. 336/3 [JPKF]
3233741
3233670
-
Thr
CGT
[ENA]
¡û
>W1910502522
FYBH01000141
Cyanobacteriota
Calothrix rhizosoleniae SC01 [FYBH]
4780
4709
-
Thr
CGT
[ENA]
¡û
>W1910842070
NAPS01000001
Cyanobacteriota
Westiellopsis prolifica IICB1 [NAPS]
2989149
2989220
+
Thr
CGT
[ENA]
¡û
>W1911638339
PVWL01000094
Cyanobacteriota
Cyanosarcina burmensis burmensis CCALA 770 [PVWL]
13633
13704
+
Thr
CGT
[ENA]
¡û
>W1911638356
PVWM01000023
Cyanobacteriota
Chroococcidiopsis cubana CCALA 043 [PVWM]
10747
10818
+
Thr
CGT
[ENA]
¡û
>W1911641166
PYCI01000022
Cyanobacteriota
Chroococcidiopsis sp. CCALA 051 [PYCI]
49802
49873
+
Thr
CGT
[ENA]
¡û
>W1911741938
QVFV01000002
Cyanobacteriota
Leptolyngbya sp. LK str. Lakshadweep [QVFV]
1067803
1067874
+
Thr
CGT
[ENA]
¡û
>W1911741970
QVFW01000001
Cyanobacteriota
Scytonema millei VB511283 [QVFW]
611515
611444
-
Thr
CGT
[ENA]
¡û
>SRA1000527
SRR001043.4040
Stromatolites, microbial fraction from Rios Mesquites microbiolite in Cuatro Cienagas, Mexico (SRP000135)
8
79
+
Thr
CGT
[SRA]
>W1810398584
PYEQ01000080
Cyanobacteriota
filamentous cyanobacterium CCP5 [PYEQ]
3240
3169
-
Thr
CGT
[ENA]
¡û
>W1810401287
PYGV01000097
Cyanobacteriota
filamentous cyanobacterium CCP3 [PYGV]
5583
5512
-
Thr
CGT
[ENA]
¡û
>C151081798
CP011382
Cyanobacteriota
Calothrix sp. 336/3 [CP011382]
3226195
3226124
-
Thr
CGT
[Ensembl]
¡û
>W1511324019
JQFA01000002
Cyanobacteriota
Leptolyngbya sp. KIOST-1 [JQFA]
360739
360668
-
Thr
CGT
[ENA]
¡û
>W1511400848
JTHE01000274
Cyanobacteriota
Lyngbya confervoides BDU141951 [JTHE]
3500862
3500791
-
Thr
CGT
[ENA]
¡û
>W1511401810
JTJC01000086
Cyanobacteriota
Scytonema millei VB511283 [JTJC]
623592
623521
-
Thr
CGT
[ENA]
¡û
>W1511401867
JTJD01000271
Cyanobacteriota
Aphanocapsa montana BDHKU210001 [JTJD]
3502461
3502390
-
Thr
CGT
[ENA]
¡û
>W1511501721
JXCB01000008
Cyanobacteriota
Tolypothrix campylonemoides VB511288 [JXCB]
1069420
1069491
+
Thr
CGT
[ENA]
¡û
>W1511504551
JXIJ01000014
Cyanobacteriota
Mastigocladus laminosus UU774 [JXIJ]
120729
120658
-
Thr
CGT
[ENA]
¡û
>C131004528
CP003597
Cyanobacteriota
Chroococcidiopsis thermalis PCC 7203 [CP003597]
5770957
5770886
-
Thr
CGT
[Ensembl]
¡û
>C131004698
CP003610
Cyanobacteriota
Calothrix sp. PCC 6303 [CP003610]
1792662
1792733
+
Thr
CGT
[Ensembl]
¡û
>W1710698093
LAZT01000010
Cyanobacteriota
Halomicronema hongdechloris C2206 [LAZT]
40659
40730
+
Thr
CGT
[ENA]
¡û
>W1710698102
LAZT01000025
Cyanobacteriota
Halomicronema hongdechloris C2206 [LAZT]
49956
50027
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK