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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Stromatolites, microbial fraction from Rios Mesquites microbiolite in Cuatro Cienagas, Mexico (SRP000135)
Anticodon = GTT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.414319 (98 seq.)
>W131036227
ALVJ01000018
Cyanobacteriota
Calothrix sp. PCC 7103 [ALVJ]
328788
328861
+
Asn
GTT
[ENA]
¡û
>W131036492
ALVS01000067
Cyanobacteriota
Fischerella sp. PCC 9339 [ALVS]
827550
827477
-
Asn
GTT
[ENA]
¡û
>W1711577081
MNPM01000004
Cyanobacteriota
Mastigocladus laminosus 74 [MNPM]
33741
33814
+
Asn
GTT
[ENA]
¡û
>W1711666522
MRCA01000016
Cyanobacteriota
Fischerella major NIES-592 [MRCA]
2676
2749
+
Asn
GTT
[ENA]
¡û
>W1711666614
MRCD01000009
Cyanobacteriota
Calothrix sp. HK-06 [MRCD]
35963
35890
-
Asn
GTT
[ENA]
¡û
>C171072573
CP018091
Cyanobacteriota
Synechococcus sp. SynAce01 [CP018091]
848527
848598
+
Asn
GTT
-
¡û
>C171097569
CP019636
Cyanobacteriota
Nostocales cyanobacterium HT-58-2 [CP019636]
596919
596846
-
Asn
GTT
-
¡û
>C171128301
LT578417
Cyanobacteriota
Cyanobium sp. NIES-981 [LT578417]
2860618
2860691
+
Asn
GTT
-
¡û
>W131063241
ANKN01000161
Cyanobacteriota
Prochlorothrix hollandica PCC 9006 [ANKN]
21710
21781
+
Asn
GTT
[ENA]
¡û
>C021085
AP008231
Cyanobacteriota
Synechococcus elongatus PCC 6301 [AP008231]
1533086
1533157
+
Asn
GTT
[Ensembl]
¡û
>C021164
CP000100
Cyanobacteriota
Synechococcus elongatus PCC 7942 = FACHB-805 [CP000100]
87796
87725
-
Asn
GTT
[Ensembl]
¡û
>C025575
CP000393
Actinomycetota
Trichodesmium erythraeum [CP000393]
1900476
1900405
-
Asn
GTT
[Ensembl]
¡û
>w013569
AANO01000004
Cyanobacteriota
Synechococcus sp. WH 5701 [AANO]
49597
49673
+
Asn
GTT
[ENA]
¡û
>W141021245
AJLJ01000058
Cyanobacteriota
Fischerella muscicola SAG 1427-1 = PCC 73103 [AJLJ]
100347
100274
-
Asn
GTT
[ENA]
¡û
>W141021330
AJLK01000184
Cyanobacteriota
Fischerella muscicola PCC 7414 [AJLK]
1440
1367
-
Asn
GTT
[ENA]
¡û
>W141021358
AJLL01000058
Cyanobacteriota
Fischerella thermalis PCC 7521 [AJLL]
42567
42494
-
Asn
GTT
[ENA]
¡û
>W141021410
AJLM01000114
Cyanobacteriota
Chlorogloeopsis fritschii PCC 9212 [AJLM]
2404
2477
+
Asn
GTT
[ENA]
¡û
>W141021434
AJLN01000055
Cyanobacteriota
Chlorogloeopsis fritschii PCC 6912 [AJLN]
31312
31239
-
Asn
GTT
[ENA]
¡û
>W141022521
AJTX01001924
Cyanobacteriota
Prochlorothrix hollandica PCC 9006 [AJTX]
1604
1533
-
Asn
GTT
[ENA]
¡û
>W141038352
ALVT01000001
Cyanobacteriota
Fischerella sp. PCC 9605 [ALVT]
1853625
1853698
+
Asn
GTT
[ENA]
¡û
>W141038505
ALVX01000017
Cyanobacteriota
Fischerella sp. PCC 9431 [ALVX]
404443
404516
+
Asn
GTT
[ENA]
¡û
>W141038613
ALWA01000006
Cyanobacteriota
cyanobacterium PCC 7702 [ALWA]
8278
8351
+
Asn
GTT
[ENA]
¡û
>WENV180689984
OCZB010366046
[OCZB] metagenome; Oyster Gut Contents
225
153
-
Asn
GTT
[ENA]
¢þ
>W08011058
ABSE01000018
Cyanobacteriota
Cyanobium sp. PCC 7001 [ABSE]
21125
21054
-
Asn
GTT
[ENA]
¡û
>WENV181384855
OFRI01016393
[OFRI] wastewater metagenome; Exp Tend VB 90WW
672
599
-
Asn
GTT
[ENA]
¢þ
>ENV08000528
ABME01040923
Stromatolite metagenome; microbial fraction from Rios Mesquites microbiolite in Cuatro Cienagas, Mexico
7
80
+
Asn
GTT
[ENA]
¡û
>WENV170391164
CEUA01207510
[CEUA] marine metagenome genome assembly TARA_132_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
322
395
+
Asn
GTT
[ENA]
¢þ
>WENV170615348
FUWD012855393
[FUWD] metagenome; unknown
5065
4994
-
Asn
GTT
[ENA]
¢þ
>C181004908
AP018254
Cyanobacteriota
Calothrix sp. NIES-3974 [AP018254]
1102159
1102086
-
Asn
GTT
-
¡û
>C181160838
CP028094
Cyanobacteriota
Synechocystis sp. IPPAS B-1465 [CP028094]
2093241
2093312
+
Asn
GTT
-
¡û
>C181169682
CP028914
Cyanobacteriota
Arthrospira sp. TJSD092 [CP028914]
4319898
4319825
-
Asn
GTT
-
¡û
>C191099551
CP033061
Cyanobacteriota
Synechococcus elongatus UTEX 3055 [CP033061]
1067376
1067449
+
Asn
GTT
-
¡û
>W141712562
JMRP01000006
Cyanobacteriota
Cyanobium sp. CACIAM 14 [JMRP]
1169
1242
+
Asn
GTT
[ENA]
¡û
>W09100662
AABK04000011
Cyanobacteriota
Trichodesmium erythraeum IMS101 [AABK]
15096
15023
-
Asn
GTT
[ENA]
¡û
>W09101125
AADZ01000002
Cyanobacteriota
Synechococcus elongatus PCC 7942 [AADZ]
623356
623429
+
Asn
GTT
[ENA]
¡û
>W141805228
JPKF01000001
Cyanobacteriota
Calothrix sp. 336/3 [JPKF]
1620995
1621068
+
Asn
GTT
[ENA]
¡û
>W1910842099
NAPS01000002
Cyanobacteriota
Westiellopsis prolifica IICB1 [NAPS]
1325469
1325396
-
Asn
GTT
[ENA]
¡û
>W1910896828
NGAA01000013
Cyanobacteriota
Fischerella thermalis 111/344/542 [NGAA]
19236
19309
+
Asn
GTT
[ENA]
¡û
>W1910909729
NGZS01000080
Cyanobacteriota
Fischerella thermalis WC1110 [NGZS]
51885
51958
+
Asn
GTT
[ENA]
¡û
>W1910909776
NGZT01000061
Cyanobacteriota
Fischerella thermalis WC119 [NGZT]
143151
143224
+
Asn
GTT
[ENA]
¡û
>W1910909841
NGZV01000050
Cyanobacteriota
Fischerella thermalis WC157 [NGZV]
109274
109347
+
Asn
GTT
[ENA]
¡û
>W1910909876
NGZW01000016
Cyanobacteriota
Fischerella thermalis WC341 [NGZW]
17879
17806
-
Asn
GTT
[ENA]
¡û
>W1910909944
NGZX01000294
Cyanobacteriota
Fischerella thermalis WC559 [NGZX]
17324
17397
+
Asn
GTT
[ENA]
¡û
>W1910909956
NGZY01000015
Cyanobacteriota
Fischerella thermalis WC558 [NGZY]
26145
26072
-
Asn
GTT
[ENA]
¡û
>W1910909993
NGZZ01000018
Cyanobacteriota
Fischerella thermalis WC542 [NGZZ]
53319
53246
-
Asn
GTT
[ENA]
¡û
>W1910910048
NHAA01000099
Cyanobacteriota
Fischerella thermalis WC538 [NHAA]
109264
109337
+
Asn
GTT
[ENA]
¡û
>W1910910082
NHAB01000080
Cyanobacteriota
Fischerella thermalis WC527 [NHAB]
19721
19794
+
Asn
GTT
[ENA]
¡û
>W1910910140
NHAC01000154
Cyanobacteriota
Fischerella thermalis WC442 [NHAC]
89938
89865
-
Asn
GTT
[ENA]
¡û
>W1910910160
NHAD01000045
Cyanobacteriota
Fischerella thermalis WC441 [NHAD]
22089
22016
-
Asn
GTT
[ENA]
¡û
>W1910910201
NHAE01000098
Cyanobacteriota
Fischerella thermalis WC439 [NHAE]
26155
26082
-
Asn
GTT
[ENA]
¡û
>W1910910264
NHAF01000113
Cyanobacteriota
Fischerella thermalis WC344 [NHAF]
102153
102080
-
Asn
GTT
[ENA]
¡û
>W1910910271
NHAG01000011
Cyanobacteriota
Fischerella thermalis WC249 [NHAG]
10567
10494
-
Asn
GTT
[ENA]
¡û
>W1910910337
NHAH01000093
Cyanobacteriota
Fischerella thermalis WC246 [NHAH]
177458
177385
-
Asn
GTT
[ENA]
¡û
>W1910910368
NHAI01000065
Cyanobacteriota
Fischerella thermalis WC245 [NHAI]
2873
2946
+
Asn
GTT
[ENA]
¡û
>W1910910398
NHAJ01000113
Cyanobacteriota
Fischerella thermalis WC217 [NHAJ]
28619
28546
-
Asn
GTT
[ENA]
¡û
>W1910910450
NHAK01000185
Cyanobacteriota
Fischerella thermalis WC213 [NHAK]
92092
92019
-
Asn
GTT
[ENA]
¡û
>W1911070655
NMQA01000050
Cyanobacteriota
Fischerella thermalis CCMEE 5268 [NMQA]
377
304
-
Asn
GTT
[ENA]
¡û
>W1911070726
NMQB01000732
Cyanobacteriota
Fischerella thermalis CCMEE 5273 [NMQB]
2883
2956
+
Asn
GTT
[ENA]
¡û
>W1911070751
NMQC01000109
Cyanobacteriota
Fischerella thermalis CCMEE 5282 [NMQC]
19447
19374
-
Asn
GTT
[ENA]
¡û
>W1911070855
NMQE01000616
Cyanobacteriota
Fischerella thermalis CCMEE 5318 [NMQE]
6534
6461
-
Asn
GTT
[ENA]
¡û
>W1911070886
NMQF01000251
Cyanobacteriota
Fischerella thermalis CCMEE 5198 [NMQF]
9483
9410
-
Asn
GTT
[ENA]
¡û
>W1911070919
NMQG01000040
Cyanobacteriota
Fischerella thermalis BR2B [NMQG]
20486
20413
-
Asn
GTT
[ENA]
¡û
>W1911070971
NMQH01000172
Cyanobacteriota
Fischerella thermalis CCMEE 5208 [NMQH]
2676
2749
+
Asn
GTT
[ENA]
¡û
>W1911071009
NMQI01000243
Cyanobacteriota
Fischerella thermalis CCMEE 5330 [NMQI]
25786
25713
-
Asn
GTT
[ENA]
¡û
>W1911071042
NMQJ01000230
Cyanobacteriota
Fischerella thermalis CCMEE 5205 [NMQJ]
2622
2695
+
Asn
GTT
[ENA]
¡û
>W1911071094
NMQK01000613
Cyanobacteriota
Fischerella thermalis CCMEE 5201 [NMQK]
2819
2892
+
Asn
GTT
[ENA]
¡û
>W1911176910
NQKX01000005
Cyanobacteriota
Synechococcus sp. MW101C3 [NQKX]
1396
1467
+
Asn
GTT
[ENA]
¡û
>W1911176964
NQKY01000022
Cyanobacteriota
Synechococcus sp. BO 8801 [NQKY]
1276
1349
+
Asn
GTT
[ENA]
¡û
>W1911178265
NQME01000311
Cyanobacteriota
Fischerella thermalis CCMEE 5194 [NQME]
2663
2736
+
Asn
GTT
[ENA]
¡û
>W1911178308
NQMF01000473
Cyanobacteriota
Fischerella thermalis CCMEE 5328 [NQMF]
2390
2463
+
Asn
GTT
[ENA]
¡û
>W1911218643
NRQW01000359
Cyanobacteriota
Fischerella muscicola CCMEE 5323 [NRQW]
1484
1411
-
Asn
GTT
[ENA]
¡û
>W1911638476
PVWP01000001
Cyanobacteriota
Aphanothece minutissima minutissima CCALA 015 [PVWP]
1256
1329
+
Asn
GTT
[ENA]
¡û
>SRA1000541
SRR001043.86209
Stromatolites, microbial fraction from Rios Mesquites microbiolite in Cuatro Cienagas, Mexico (SRP000135)
7
80
+
Asn
GTT
[SRA]
>W1810185576
PKGD01000162
Cyanobacteriota
Arthrospira sp. O9.13F [PKGD]
6641
6714
+
Asn
GTT
[ENA]
¡û
>W1810387041
PXVC01000178
Cyanobacteriota
Synechococcus lacustris Tous [PXVC]
155
82
-
Asn
GTT
[ENA]
¡û
>W1810526284
QCPC01000017
Cyanobacteriota
Prochlorococcus sp. AG-436-C13 [QCPC]
31260
31333
+
Asn
GTT
[ENA]
¡û
>C151009145
CP006471
Cyanobacteriota
Synechococcus elongatus UTEX 2973 [CP006471]
480533
480606
+
Asn
GTT
[Ensembl]
¡û
>C151081761
CP011382
Cyanobacteriota
Calothrix sp. 336/3 [CP011382]
1618996
1619069
+
Asn
GTT
[Ensembl]
¡û
>SRA1028065
SRR035086.249299
454 Sequencing (SRP001807)
293
222
-
Asn
GTT
[SRA]
>SRA1051947
SRR035098.111825
454 Sequencing (SRP001819)
174
245
+
Asn
GTT
[SRA]
>SRA1052036
SRR035098.127718
454 Sequencing (SRP001819)
92
163
+
Asn
GTT
[SRA]
>SRA1052407
SRR035098.197387
454 Sequencing (SRP001819)
215
286
+
Asn
GTT
[SRA]
>SRA1052667
SRR035098.249151
454 Sequencing (SRP001819)
220
291
+
Asn
GTT
[SRA]
>SRA1052804
SRR035098.278745
454 Sequencing (SRP001819)
183
254
+
Asn
GTT
[SRA]
>SRA1053012
SRR035098.317925
454 Sequencing (SRP001819)
124
195
+
Asn
GTT
[SRA]
>SRA1053153
SRR035098.349098
454 Sequencing (SRP001819)
106
177
+
Asn
GTT
[SRA]
>SRA1053313
SRR035098.380189
454 Sequencing (SRP001819)
324
395
+
Asn
GTT
[SRA]
>SRA1053319
SRR035098.381998
454 Sequencing (SRP001819)
215
286
+
Asn
GTT
[SRA]
>SRA1053493
SRR035098.417677
454 Sequencing (SRP001819)
215
286
+
Asn
GTT
[SRA]
>SRA1053497
SRR035098.419449
454 Sequencing (SRP001819)
413
342
-
Asn
GTT
[SRA]
>C11122291
AP012205
Cyanobacteriota
Synechocystis sp. PCC 6803 GT-S [AP012205]
2091217
2091288
+
Asn
GTT
[Ensembl]
¡û
>W1511504552
JXIJ01000015
Cyanobacteriota
Mastigocladus laminosus UU774 [JXIJ]
33741
33814
+
Asn
GTT
[ENA]
¡û
>W1511564136
LADK01008508
Cyanobacteriota
Trichodesmium erythraeum 21-75 [LADK]
5169
5242
+
Asn
GTT
[ENA]
¡û
>W1511573458
LAMW01000052
Cyanobacteriota
Trichodesmium thiebautii H9-4 [LAMW]
4301
4230
-
Asn
GTT
[ENA]
¡û
>W1511679458
LFEK01000006
Cyanobacteriota
Synechococcus sp. GFB01 [LFEK]
20804
20731
-
Asn
GTT
[ENA]
¡û
>W11181301
AGIZ01000012
Cyanobacteriota
Fischerella thermalis JSC-11 [AGIZ]
111578
111651
+
Asn
GTT
[ENA]
¡û
>C161002643
AP017305
Cyanobacteriota
Fischerella sp. NIES-3754 [AP017305]
1737356
1737283
-
Asn
GTT
[Ensembl]
¡û
>C131003918
CP003495
Cyanobacteriota
Cyanobium gracile PCC 6307 [CP003495]
2852423
2852350
-
Asn
GTT
[Ensembl]
¡û
Identical group No.457184 (2 seq.)
>ENV08000529
ABME01046692
Stromatolite metagenome; microbial fraction from Rios Mesquites microbiolite in Cuatro Cienagas, Mexico
76
3
-
Asn
GTT
[ENA]
¡û
>SRA1000531
SRR001043.41396
Stromatolites, microbial fraction from Rios Mesquites microbiolite in Cuatro Cienagas, Mexico (SRP000135)
76
3
-
Asn
GTT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK