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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Stromatolites, microbial fraction from Rios Mesquites microbiolite in Cuatro Cienagas, Mexico (SRP000135)
Anticodon = TCC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.487044 (21 seq.)
>W131055453
ANBV01000029
Bacillota
Planococcus halocryophilus Or1 [ANBV]
237131
237204
+
Gly
TCC
[ENA]
¡û
>W131063249
ANKN01000228
Cyanobacteriota
Prochlorothrix hollandica PCC 9006 [ANKN]
56195
56267
+
Gly
TCC
[ENA]
¡û
>W1711330205
MBMU01000018
Bacillota
Planococcus faecalis [MBMU]
4987
5060
+
Gly
TCC
[ENA]
¡û
>W1711334316
MBQG01000014
Bacillota
Planococcus salinarum [MBQG]
109
182
+
Gly
TCC
[ENA]
¡û
>W1711509501
MKZR01000001
Cyanobacteriota
Moorena producens NAK12DEC93-3La [MKZR]
864294
864365
+
Gly
TCC
[ENA]
¡û
>W1711509587
MKZS01000001
Cyanobacteriota
Moorena bouillonii PNG5-198 [MKZS]
6004879
6004808
-
Gly
TCC
[ENA]
¡û
>C171064180
CP017599
Cyanobacteriota
Moorena producens PAL-8-15-08-1 [CP017599]
1147836
1147907
+
Gly
TCC
-
¡û
>C171092783
CP019401
Bacillota
Planococcus faecalis AJ003 [CP019401]
534534
534607
+
Gly
TCC
-
¡û
>C171092820
CP019401
Bacillota
Planococcus faecalis AJ003 [CP019401]
1215325
1215398
+
Gly
TCC
-
¡û
>W141038552
ALVY01000185
Cyanobacteriota
Gloeocapsa sp. PCC 73106 [ALVY]
7285
7215
-
Gly
TCC
[ENA]
¡û
>ENV08000522
ABME01021682
Stromatolite metagenome; microbial fraction from Rios Mesquites microbiolite in Cuatro Cienagas, Mexico
90
18
-
Gly
TCC
[ENA]
¡û
>W1911682426
QKOI01000005
Bacillota
Planomicrobium sp. Y50 [QKOI]
453
380
-
Gly
TCC
[ENA]
¡û
>SRA1000543
SRR001043.116455
Stromatolites, microbial fraction from Rios Mesquites microbiolite in Cuatro Cienagas, Mexico (SRP000135)
90
18
-
Gly
TCC
[SRA]
>W1810698379
QLZR01000005
Bacillota
Planococcus halotolerans SCU63 [QLZR]
199887
199960
+
Gly
TCC
[ENA]
¡û
>W1810783071
QQRT01000015
Bacillota
Planococcus salinarum ISL-16 [QQRT]
320
247
-
Gly
TCC
[ENA]
¡û
>W1810783091
QQRT01000057
Bacillota
Planococcus salinarum ISL-16 [QQRT]
857
784
-
Gly
TCC
[ENA]
¡û
>C151044660
CP009129
Bacillota
Planococcus sp. PAMC 21323 [CP009129]
1021385
1021458
+
Gly
TCC
[Ensembl]
¡û
>W11143194
AEPQ01000271
Cyanobacteriota
Moorena producens 3L [AEPQ]
61697
61768
+
Gly
TCC
[ENA]
¡û
>C161058747
CP013661
Bacillota
Planococcus kocurii ATCC 43650 [CP013661]
1230735
1230662
-
Gly
TCC
[Ensembl]
¡û
>C161058784
CP013661
Bacillota
Planococcus kocurii ATCC 43650 [CP013661]
555465
555392
-
Gly
TCC
[Ensembl]
¡û
>C161098414
CP016537
Bacillota
Planococcus halocryophilus DSM 24743 [CP016537]
3066953
3067026
+
Gly
TCC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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