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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Stromatolites, microbial fraction from Rios Mesquites microbiolite in Cuatro Cienagas, Mexico (SRP000135)
Anticodon = TGA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.66407 (9 seq.)
>W1710805047
LJZR01000035
Cyanobacteriota
Phormidesmis priestleyi Ana [LJZR]
9842
9755
-
Ser
TGA
[ENA]
¡û
>WENV181233688
OFET01000042
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
9738
9651
-
Ser
TGA
[ENA]
¢þ
>ENV08000527
ABME01038211
Stromatolite metagenome; microbial fraction from Rios Mesquites microbiolite in Cuatro Cienagas, Mexico
17
101
+
Ser
TGA
[ENA]
¡û
>WENV183747975
PPFU01004844
[PPFU] hypolithon metagenome; Antarctic Hypolithon
4824
4738
-
Ser
TGA
[ENA]
¢þ
>W1910976642
NKFP01000004
Cyanobacteriota
Leptolyngbya ohadii IS1 [NKFP]
227200
227286
+
Ser
TGA
[ENA]
¡û
>W1911219931
NRTA01000011
Cyanobacteriota
Leptolyngbya sp. BC1307 [NRTA]
9869
9783
-
Ser
TGA
[ENA]
¡û
>SRA1000529
SRR001043.17824
Stromatolites, microbial fraction from Rios Mesquites microbiolite in Cuatro Cienagas, Mexico (SRP000135)
17
101
+
Ser
TGA
[SRA]
>C131004249
CP003549
Cyanobacteriota
Rivularia sp. PCC 7116 [CP003549]
829952
829866
-
Ser
TGA
[Ensembl]
¡û
>W1610668904
LJZR01000035
Cyanobacteriota
Phormidesmis priestleyi Ana [LJZR]
9842
9755
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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