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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Stromatolites, viral fraction from Pozas Azules microbiolite in Cuatro Cienagas, Mexico (SRP000136)
Anticodon = TAT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.630105 (2 seq.)
>ENV08000638
ABMG01057702
stromatolite metagenome; viral fraction from Pozas Azules microbiolite in Cuatro Cienagas, Mexico
115
41
-
Ile
TAT
[ENA]
¡û
>SRA1000614
SRR001044.232580
Stromatolites, viral fraction from Pozas Azules microbiolite in Cuatro Cienagas, Mexico (SRP000136)
115
41
-
Ile
TAT
[SRA]
Identical group No.630118 (2 seq.)
>ENV08000675
ABMG01202629
stromatolite metagenome; viral fraction from Pozas Azules microbiolite in Cuatro Cienagas, Mexico
86
11
-
Ile
TAT
[ENA]
¡û
>SRA1000609
SRR001044.216971
Stromatolites, viral fraction from Pozas Azules microbiolite in Cuatro Cienagas, Mexico (SRP000136)
86
11
-
Ile
TAT
[SRA]
Identical group No.762418 (2 seq.)
>ENV08000646
ABMG01087056
stromatolite metagenome; viral fraction from Pozas Azules microbiolite in Cuatro Cienagas, Mexico
24
98
+
Ile
TAT
[ENA]
¡û
>SRA1000632
SRR001044.304676
Stromatolites, viral fraction from Pozas Azules microbiolite in Cuatro Cienagas, Mexico (SRP000136)
24
98
+
Ile
TAT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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