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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synechococcus
Anticodon = TAC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.653908 (17 seq.)
>PHG181002635
KX349228
Myoviridae
Synechococcus phage S-RIM2 (KX349228)
13794
13865
+
Val
TAC
[ENA]
¡û
>PHG181002647
KX349230
Myoviridae
Synechococcus phage S-RIM2 (KX349230)
13794
13865
+
Val
TAC
[ENA]
¡û
>PHG181002665
KX349233
Myoviridae
Synechococcus phage S-RIM2 (KX349233)
13806
13877
+
Val
TAC
[ENA]
¡û
>PHG181002677
KX349235
Myoviridae
Synechococcus phage S-RIM2 (KX349235)
13797
13868
+
Val
TAC
[ENA]
¡û
>PHG181002689
KX349237
Myoviridae
Synechococcus phage S-RIM2 (KX349237)
13794
13865
+
Val
TAC
[ENA]
¡û
>PHG181002713
KX349241
Myoviridae
Synechococcus phage S-RIM2 (KX349241)
13797
13868
+
Val
TAC
[ENA]
¡û
>PHG181002719
KX349242
Myoviridae
Synechococcus phage S-RIM2 (KX349242)
13799
13870
+
Val
TAC
[ENA]
¡û
>PHG181002755
KX349248
Myoviridae
Synechococcus phage S-RIM2 (KX349248)
13788
13859
+
Val
TAC
[ENA]
¡û
>PHG181002773
KX349251
Myoviridae
Synechococcus phage S-RIM2 (KX349251)
13794
13865
+
Val
TAC
[ENA]
¡û
>PHG181002779
KX349252
Myoviridae
Synechococcus phage S-RIM2 (KX349252)
13782
13853
+
Val
TAC
[ENA]
¡û
>PHG181002827
KX349260
Myoviridae
Synechococcus phage S-RIM2 (KX349260)
13794
13865
+
Val
TAC
[ENA]
¡û
>PHG181002839
KX349262
Myoviridae
Synechococcus phage S-RIM2 (KX349262)
13794
13865
+
Val
TAC
[ENA]
¡û
>PHG181002845
KX349263
Myoviridae
Synechococcus phage S-RIM2 (KX349263)
13803
13874
+
Val
TAC
[ENA]
¡û
>PHG181002863
KX349266
Synechococcus
Synechococcus phage S-RIM2
13794
13865
+
Val
TAC
[ENA]
¡û
>PHG181002869
KX349267
Myoviridae
Synechococcus phage S-RIM2 (KX349267)
13797
13868
+
Val
TAC
[ENA]
¡û
>PHG14100599
HQ317291
Myoviridae
Synechococcus phage S-RIM2 R9_2006 RIM2_R9_906 (HQ317291)
13782
13853
+
Val
TAC
[ENA]
¡û
>PHG14100605
HQ317292
Myoviridae
Synechococcus phage S-RIM2 R1_1999 RIM2_R1_999 (HQ317292)
13794
13865
+
Val
TAC
[ENA]
¡û
Identical group No.669913 (11 seq.)
>WENV170311143
CESM01110478
[CESM] marine metagenome genome assembly TARA_102_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
143
217
+
Val
TAC
[ENA]
¢þ
>WENV170812013
MDSW01176213
[MDSW] marine metagenome; seawater
1032
1103
+
Val
TAC
[ENA]
¢þ
>WENV170926031
MDTG01093824
[MDTG] marine metagenome; seawater
246
320
+
Val
TAC
[ENA]
¢þ
>PHG181000284
KJ019054
Myoviridae
Synechococcus phage ACG-2014e (KJ019054)
154420
154491
+
Val
TAC
[ENA]
¡û
>PHG181000344
KJ019069
Myoviridae
Synechococcus phage ACG-2014j (KJ019069)
158239
158310
+
Val
TAC
[ENA]
¡û
>PHG181000423
KJ019089
Myoviridae
Synechococcus phage ACG-2014j (KJ019089)
158238
158309
+
Val
TAC
[ENA]
¡û
>PHG181000439
KJ019094
Myoviridae
Synechococcus phage ACG-2014e (KJ019094)
154329
154400
+
Val
TAC
[ENA]
¡û
>PHG181000634
KJ019156
Myoviridae
Synechococcus phage ACG-2014e (KJ019156)
154420
154491
+
Val
TAC
[ENA]
¡û
>PHG181002231
KU686201
Myoviridae
Synechococcus phage S-CAM4 (KU686201)
158163
158234
+
Val
TAC
[ENA]
¡û
>PHG181002238
KU686202
Synechococcus
Synechococcus phage S-CAM4
158221
158292
+
Val
TAC
[ENA]
¡û
>PHG14102530
KF156338
Myoviridae
Synechococcus phage ACG-2014h IOEB 9805 (KF156338)
152665
152736
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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