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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synechococcus
Anticodon = TAG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.185395 (10 seq.)
>WENV170812012
MDSW01176213
[MDSW] marine metagenome; seawater
947
1029
+
Leu
TAG
[ENA]
¢þ
>WENV170926030
MDTG01093824
[MDTG] marine metagenome; seawater
16
100
+
Leu
TAG
[ENA]
¢þ
>PHG181000283
KJ019054
Myoviridae
Synechococcus phage ACG-2014e (KJ019054)
154335
154417
+
Leu
TAG
[ENA]
¡û
>PHG181000343
KJ019069
Myoviridae
Synechococcus phage ACG-2014j (KJ019069)
158154
158236
+
Leu
TAG
[ENA]
¡û
>PHG181000422
KJ019089
Myoviridae
Synechococcus phage ACG-2014j (KJ019089)
158153
158235
+
Leu
TAG
[ENA]
¡û
>PHG181000438
KJ019094
Myoviridae
Synechococcus phage ACG-2014e (KJ019094)
154244
154326
+
Leu
TAG
[ENA]
¡û
>PHG181000633
KJ019156
Myoviridae
Synechococcus phage ACG-2014e (KJ019156)
154335
154417
+
Leu
TAG
[ENA]
¡û
>PHG181002224
KU686200
Myoviridae
Synechococcus phage S-CAM4 (KU686200)
158052
158134
+
Leu
TAG
[ENA]
¡û
>PHG181002230
KU686201
Myoviridae
Synechococcus phage S-CAM4 (KU686201)
158078
158160
+
Leu
TAG
[ENA]
¡û
>PHG181002237
KU686202
Synechococcus
Synechococcus phage S-CAM4
158136
158218
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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