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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synechococcus
Anticodon = TCC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.669914 (12 seq.)
>WENV170532683
CEWO01058684
[CEWO] marine metagenome genome assembly TARA_145_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
11294
11223
-
Gly
TCC
[ENA]
¢þ
>WENV170599788
FUWD010092360
[FUWD] metagenome; unknown
137
208
+
Gly
TCC
[ENA]
¢þ
>WENV170812014
MDSW01176213
[MDSW] marine metagenome; seawater
4172
4243
+
Gly
TCC
[ENA]
¢þ
>WENV170927661
MDTG01120703
[MDTG] marine metagenome; seawater
548
619
+
Gly
TCC
[ENA]
¢þ
>PHG181000285
KJ019054
Myoviridae
Synechococcus phage ACG-2014e (KJ019054)
156950
157021
+
Gly
TCC
[ENA]
¡û
>PHG181000345
KJ019069
Myoviridae
Synechococcus phage ACG-2014j (KJ019069)
161447
161518
+
Gly
TCC
[ENA]
¡û
>PHG181000395
KJ019082
Myoviridae
Synechococcus phage ACG-2014i (KJ019082)
155856
155927
+
Gly
TCC
[ENA]
¡û
>PHG181000440
KJ019094
Myoviridae
Synechococcus phage ACG-2014e (KJ019094)
156859
156930
+
Gly
TCC
[ENA]
¡û
>PHG181000635
KJ019156
Myoviridae
Synechococcus phage ACG-2014e (KJ019156)
156950
157021
+
Gly
TCC
[ENA]
¡û
>PHG181002225
KU686200
Myoviridae
Synechococcus phage S-CAM4 (KU686200)
161328
161399
+
Gly
TCC
[ENA]
¡û
>PHG181002232
KU686201
Myoviridae
Synechococcus phage S-CAM4 (KU686201)
161371
161442
+
Gly
TCC
[ENA]
¡û
>PHG181002239
KU686202
Synechococcus
Synechococcus phage S-CAM4
161429
161500
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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