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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Anticodon = CAA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184302 (12 seq.)
>C025137
CP000097
Cyanobacteriota
Synechococcus sp. CC9902 [CP000097]
1483715
1483796
+
Leu
CAA
[Ensembl]
¡û
>w019167
AATZ01000003
Cyanobacteriota
Synechococcus sp. BL107 [AATZ]
129467
129383
-
Leu
CAA
[ENA]
¡û
>WENV180100808
OAOT01000064
[OAOT] marine metagenome; Mesotrophic water
1113
1031
-
Leu
CAA
[ENA]
¢þ
>WENV180114555
OAPS01018803
[OAPS] marine metagenome; sea water
559
641
+
Leu
CAA
[ENA]
¢þ
>WENV180398738
OBQA01122887
[OBQA] marine metagenome; PVDF and polycarbonate filters
121
203
+
Leu
CAA
[ENA]
¢þ
>WENV180638937
OCRI01055499
[OCRI] marine metagenome; Sterile flask
389
307
-
Leu
CAA
[ENA]
¢þ
>WENV183060037
OLHW01005327
[OLHW] seawater metagenome; Sea water
1019
1101
+
Leu
CAA
[ENA]
¢þ
>WENV170489691
CEVP01123785
[CEVP] marine metagenome genome assembly TARA_150_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
276
194
-
Leu
CAA
[ENA]
¢þ
>WENV170498666
CEVT01058811
[CEVT] marine metagenome genome assembly TARA_150_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
476
558
+
Leu
CAA
[ENA]
¢þ
>WENV170505372
CEVW01056694
[CEVW] marine metagenome genome assembly TARA_149_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1559
1641
+
Leu
CAA
[ENA]
¢þ
>WENV170807191
MDSW01094419
[MDSW] marine metagenome; seawater
3714
3796
+
Leu
CAA
[ENA]
¢þ
>SRA1002573
SRR001663.45419
Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
83
1
-
Leu
CAA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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