tRNA genes clustered and arranged according to each identical group

Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)

Anticodon = CCC

HIT: 2 Group(s).
Download Sequence Representative sequence of each cluster
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Select
 Sequence ID Genome ID
(or Accession No.)		 Phylum/Class
(Sample source for ENV)		 Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.661723 (36 seq.)
>C025168 CP000097 Cyanobacteriota Synechococcus sp. CC9902 [CP000097] 37566 37495 - Gly CCC [Ensembl] ¡û
>w019152 AATZ01000002 Cyanobacteriota Synechococcus sp. BL107 [AATZ] 328911 328985 + Gly CCC [ENA] ¡û
>WENV180050746 MPLU02165378 [MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter 7764 7835 + Gly CCC [ENA] ¢þ
>WENV180058030 MPLX02032497 [MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter 75 146 + Gly CCC [ENA] ¢þ
>WENV180080692 MPMC02045118 [MPMC] marine metagenome; 100 m water sample filtered on 30 um supor filter 3654 3583 - Gly CCC [ENA] ¢þ
>WENV180090825 MPMF02159449 [MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter 3992 4063 + Gly CCC [ENA] ¢þ
>WENV180100821 OAOT01000447 [OAOT] marine metagenome; Mesotrophic water 1323 1394 + Gly CCC [ENA] ¢þ
>WENV180114330 OAPS01004656 [OAPS] marine metagenome; sea water 703 632 - Gly CCC [ENA] ¢þ
>WENV180115745 OAPT01028803 [OAPT] marine metagenome; seawater 149 220 + Gly CCC [ENA] ¢þ
>WENV180381998 OBOS01067854 [OBOS] marine metagenome; ENVO 00002150 16 87 + Gly CCC [ENA] ¢þ
>WENV180385630 OBPA01050112 [OBPA] marine metagenome; Sterile flask 103 174 + Gly CCC [ENA] ¢þ
>WENV180395497 OBPT01030103 [OBPT] marine metagenome; ENVO:00002010 seawater 311 382 + Gly CCC [ENA] ¢þ
>WENV180636729 OCRF01048139 [OCRF] marine metagenome; niskin bottle 252 323 + Gly CCC [ENA] ¢þ
>WENV180642083 OCRN01198008 [OCRN] marine metagenome; ENVO:00002010, 'SEA WATER 94 23 - Gly CCC [ENA] ¢þ
>WENV181092610 OEBK01013626 [OEBK] marine metagenome; ENVO:00002010 for 'seawater 493 422 - Gly CCC [ENA] ¢þ
>WENV183800866 PVBE010624748 [PVBE] marine metagenome; water 97 168 + Gly CCC [ENA] ¢þ
>WENV170132260 CENT01052908 [CENT] marine metagenome genome assembly TARA_007_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 340 269 - Gly CCC [ENA] ¢þ
>WENV170267728 CERG01021550 [CERG] marine metagenome genome assembly TARA_068_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1149 1220 + Gly CCC [ENA] ¢þ
>WENV170274976 CERM01055867 [CERM] marine metagenome genome assembly TARA_067_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 277 206 - Gly CCC [ENA] ¢þ
>WENV170284156 CERV01023107 [CERV] marine metagenome genome assembly TARA_068_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 662 733 + Gly CCC [ENA] ¢þ
>WENV170284508 CERV01056109 [CERV] marine metagenome genome assembly TARA_068_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 811 740 - Gly CCC [ENA] ¢þ
>WENV170489537 CEVP01101367 [CEVP] marine metagenome genome assembly TARA_150_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1126 1197 + Gly CCC [ENA] ¢þ
>WENV170496866 CEVS01107837 [CEVS] marine metagenome genome assembly TARA_151_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 2090 2019 - Gly CCC [ENA] ¢þ
>WENV170502581 CEVV01008340 [CEVV] marine metagenome genome assembly TARA_152_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 603 532 - Gly CCC [ENA] ¢þ
>WENV170503370 CEVV01083769 [CEVV] marine metagenome genome assembly TARA_152_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1055 1126 + Gly CCC [ENA] ¢þ
>WENV170505559 CEVW01075382 [CEVW] marine metagenome genome assembly TARA_149_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 938 867 - Gly CCC [ENA] ¢þ
>WENV170507080 CEVX01015799 [CEVX] marine metagenome genome assembly TARA_152_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 938 867 - Gly CCC [ENA] ¢þ
>WENV170515402 CEWB01021705 [CEWB] marine metagenome genome assembly TARA_068_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1149 1220 + Gly CCC [ENA] ¢þ
>WENV170626624 FUWD013227078 [FUWD] metagenome; unknown 462 536 + Gly CCC [ENA] ¢þ
>WENV170799569 MDSV01215546 [MDSV] marine metagenome; seawater 1188 1259 + Gly CCC [ENA] ¢þ
>WENV170805371 MDSW01063689 [MDSW] marine metagenome; seawater 579 505 - Gly CCC [ENA] ¢þ
>WENV171002528 NHNJ01080931 [NHNJ] marine metagenome; surface waters at 20 m depth at the end of the Scripps Institution of Oceanography (SIO) pier 2971 3042 + Gly CCC [ENA] ¢þ
>SRA1002669 SRR001663.328666 Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219) 30 101 + Gly CCC [SRA]
>W1810520018 QCFY01000010 Cyanobacteriota Prochlorococcus sp. AG-363-O06 [QCFY] 19864 19793 - Gly CCC [ENA] ¡û
>W1810527852 QCRX01000003 Cyanobacteriota Prochlorococcus sp. AG-463-P14 [QCRX] 26585 26514 - Gly CCC [ENA] ¡û
>W1810529808 QCVD01000002 Cyanobacteriota Synechococcus sp. AG-683-C23 [QCVD] 76810 76881 + Gly CCC [ENA] ¡û
Identical group No.662403 (29 seq.)
>C025080 CP000435 Cyanobacteriota Synechococcus sp. CC9311 [CP000435] 45561 45490 - Gly CCC [Ensembl] ¡û
>WENV180114305 OAPS01003698 [OAPS] marine metagenome; sea water 1406 1335 - Gly CCC [ENA] ¢þ
>WENV180386236 OBPB01074051 [OBPB] marine metagenome; Sterile flask 214 143 - Gly CCC [ENA] ¢þ
>WENV180389296 OBPJ01000487 [OBPJ] marine metagenome; seawater 1787 1716 - Gly CCC [ENA] ¢þ
>WENV180390459 OBPK01167358 [OBPK] marine metagenome; Sterile flask 46 117 + Gly CCC [ENA] ¢þ
>WENV180390711 OBPL01012503 [OBPL] marine metagenome; Sterivex filter 314 385 + Gly CCC [ENA] ¢þ
>WENV180391970 OBPO01000149 [OBPO] marine metagenome; seawater 3025 3096 + Gly CCC [ENA] ¢þ
>WENV180393254 OBPQ01008602 [OBPQ] marine metagenome; polypropylene bottle 527 598 + Gly CCC [ENA] ¢þ
>WENV180594876 OCPA01030870 [OCPA] marine metagenome; ENVO:00002010 73 2 - Gly CCC [ENA] ¢þ
>WENV180638731 OCRI01011611 [OCRI] marine metagenome; Sterile flask 678 607 - Gly CCC [ENA] ¢þ
>WENV182545573 OJBN01007596 [OJBN] seawater metagenome; Sea water 1367 1296 - Gly CCC [ENA] ¢þ
>WENV182553056 OJCQ01015681 [OJCQ] seawater metagenome; Sea water 234 163 - Gly CCC [ENA] ¢þ
>WENV182571076 OJFG01000268 [OJFG] seawater metagenome; Sea water 17746 17675 - Gly CCC [ENA] ¢þ
>WENV170114949 CENF01307829 [CENF] marine metagenome genome assembly TARA_004_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 175 246 + Gly CCC [ENA] ¢þ
>WENV170148485 CENZ01380691 [CENZ] marine metagenome genome assembly TARA_025_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 771 842 + Gly CCC [ENA] ¢þ
>WENV170323930 CESS01037374 [CESS] marine metagenome genome assembly TARA_023_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 2283 2212 - Gly CCC [ENA] ¢þ
>WENV170401858 CEUE01282143 [CEUE] marine metagenome genome assembly TARA_133_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 6196 6125 - Gly CCC [ENA] ¢þ
>WENV170508042 CEVX01119934 [CEVX] marine metagenome genome assembly TARA_152_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 207 278 + Gly CCC [ENA] ¢þ
>WENV170877666 MDTC01062246 [MDTC] marine metagenome; seawater 2546 2617 + Gly CCC [ENA] ¢þ
>WENV171002817 NHNJ01175243 [NHNJ] marine metagenome; surface waters at 20 m depth at the end of the Scripps Institution of Oceanography (SIO) pier 153 79 - Gly CCC [ENA] ¢þ
>SRA1002603 SRR001663.115244 Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219) 95 24 - Gly CCC [SRA]
>SRA1002665 SRR001663.323711 Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219) 95 24 - Gly CCC [SRA]
>W1810529361 QCUL01000002 Cyanobacteriota Synechococcus sp. AG-679-C18 [QCUL] 60426 60497 + Gly CCC [ENA] ¡û
>W1810529737 QCUZ01000036 Cyanobacteriota Synechococcus sp. AG-683-A03 [QCUZ] 1938 1867 - Gly CCC [ENA] ¡û
>W1810529954 QCVK01000008 Cyanobacteriota Synechococcus sp. AG-686-A03 [QCVK] 28385 28314 - Gly CCC [ENA] ¡û
>ENV09001617 ABVN01017417 Marine metagenome gcontig_contig00001 95 24 - Gly CCC [ENA] ¡û
>W11180865 AGIK01000007 Cyanobacteriota Synechococcus sp. WH 8016 [AGIK] 67173 67102 - Gly CCC [ENA] ¡û
>WENV054982 AACY023206719 Marine microbial communities from Global Ocean Sampling (GOS) 1267 1193 - Gly CCC [ENA]
>C161037969 CP011941 Cyanobacteriota Synechococcus sp. WH 8020 [CP011941] 2189296 2189225 - Gly CCC [Ensembl] ¡û
Select
 Sequence ID Genome ID
(or Accession No.)		 Phylum/Class
(Sample source for ENV)		 Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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