tRNA genes clustered and arranged according to each identical group

Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)

Anticodon = CGT

HIT: 1 Group(s).
Download Sequence Representative sequence of each cluster
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Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.466541 (79 seq.)
>C025055 CP000435 Cyanobacteriota Synechococcus sp. CC9311 [CP000435] 2087350 2087422 + Thr CGT [Ensembl] ¡û
>C025164 CP000097 Cyanobacteriota Synechococcus sp. CC9902 [CP000097] 595673 595601 - Thr CGT [Ensembl] ¡û
>C025273 CT971583 Cyanobacteriota Synechococcus sp. WH 7803 [CT971583] 1911453 1911525 + Thr CGT [Ensembl] ¡û
>w019191 AAUA01000001 Cyanobacteriota Synechococcus sp. RS9916 [AAUA] 698682 698757 + Thr CGT [ENA] ¡û
>w019144 AATZ01000001 Cyanobacteriota Synechococcus sp. BL107 [AATZ] 694773 694848 + Thr CGT [ENA] ¡û
>w014491 AAOK01000001 Cyanobacteriota Synechococcus sp. WH 7805 [AAOK] 208593 208518 - Thr CGT [ENA] ¡û
>w013597 AANO01000074 Cyanobacteriota Synechococcus sp. WH 5701 [AANO] 112 37 - Thr CGT [ENA] ¡û
>WENV180100913 OAOT01010086 [OAOT] marine metagenome; Mesotrophic water 335 407 + Thr CGT [ENA] ¢þ
>WENV180114299 OAPS01003608 [OAPS] marine metagenome; sea water 743 815 + Thr CGT [ENA] ¢þ
>WENV180115670 OAPT01018679 [OAPT] marine metagenome; seawater 423 351 - Thr CGT [ENA] ¢þ
>WENV180358454 OBNP01066385 [OBNP] marine metagenome; seawater 228 300 + Thr CGT [ENA] ¢þ
>WENV180361619 OBNV01118170 [OBNV] marine metagenome; ENVO:00002042 278 350 + Thr CGT [ENA] ¢þ
>WENV180364855 OBOA01154478 [OBOA] marine metagenome; Deep Chlorophyll Maximum 279 207 - Thr CGT [ENA] ¢þ
>WENV180389581 OBPJ01051244 [OBPJ] marine metagenome; seawater 184 256 + Thr CGT [ENA] ¢þ
>WENV180390851 OBPL01049589 [OBPL] marine metagenome; Sterivex filter 272 344 + Thr CGT [ENA] ¢þ
>WENV180392010 OBPO01001600 [OBPO] marine metagenome; seawater 1816 1888 + Thr CGT [ENA] ¢þ
>WENV180394662 OBPS01033323 [OBPS] marine metagenome; ENVO:00002010 seawater 338 410 + Thr CGT [ENA] ¢þ
>WENV180397536 OBPY01021163 [OBPY] marine metagenome; Mesotrophic water 189 261 + Thr CGT [ENA] ¢þ
>WENV180399937 OBQO01083579 [OBQO] marine metagenome; ENVO:00002010 173 101 - Thr CGT [ENA] ¢þ
>WENV180585606 OCOL01039312 [OCOL] marine metagenome; ENVO:00002010 242 170 - Thr CGT [ENA] ¢þ
>WENV181092502 OEBK01004179 [OEBK] marine metagenome; ENVO:00002010 for 'seawater 323 251 - Thr CGT [ENA] ¢þ
>W141219972 AZXL01000009 Cyanobacteriota Synechococcus sp. CC9616 [AZXL] 61199 61271 + Thr CGT [ENA] ¡û
>WENV182553835 OJCR01038291 [OJCR] seawater metagenome; Sea water 216 144 - Thr CGT [ENA] ¢þ
>WENV182556703 OJDG01039517 [OJDG] seawater metagenome; Sea water 357 429 + Thr CGT [ENA] ¢þ
>WENV182571196 OJFG01001407 [OJFG] seawater metagenome; Sea water 2504 2432 - Thr CGT [ENA] ¢þ
>WENV183060134 OLHW01019766 [OLHW] seawater metagenome; Sea water 94 166 + Thr CGT [ENA] ¢þ
>WENV183698597 OZSS01002177 [OZSS] metagenome; Seawater sample 6557 6483 - Thr CGT [ENA] ¢þ
>WENV170113406 CENF01066075 [CENF] marine metagenome genome assembly TARA_004_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 4652 4580 - Thr CGT [ENA] ¢þ
>WENV170146295 CENZ01045320 [CENZ] marine metagenome genome assembly TARA_025_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 291 216 - Thr CGT [ENA] ¢þ
>WENV170150771 CEOC01155620 [CEOC] marine metagenome genome assembly TARA_036_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 338 410 + Thr CGT [ENA] ¢þ
>WENV170178817 CEOV01085326 [CEOV] marine metagenome genome assembly TARA_062_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 163 235 + Thr CGT [ENA] ¢þ
>WENV170205692 CEPT01114406 [CEPT] marine metagenome genome assembly TARA_039_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 274 202 - Thr CGT [ENA] ¢þ
>WENV170212097 CEPW01144614 [CEPW] marine metagenome genome assembly TARA_038_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 7895 7823 - Thr CGT [ENA] ¢þ
>WENV170268219 CERG01058033 [CERG] marine metagenome genome assembly TARA_068_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1485 1557 + Thr CGT [ENA] ¢þ
>WENV170274408 CERM01015712 [CERM] marine metagenome genome assembly TARA_067_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 426 498 + Thr CGT [ENA] ¢þ
>WENV170279736 CERR01049484 [CERR] marine metagenome genome assembly TARA_068_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 556 484 - Thr CGT [ENA] ¢þ
>WENV170285045 CERV01116142 [CERV] marine metagenome genome assembly TARA_068_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 409 337 - Thr CGT [ENA] ¢þ
>WENV170314797 CESO01031078 [CESO] marine metagenome genome assembly TARA_093_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 310 382 + Thr CGT [ENA] ¢þ
>WENV170314887 CESO01039939 [CESO] marine metagenome genome assembly TARA_093_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 188 116 - Thr CGT [ENA] ¢þ
>WENV170401457 CEUE01236211 [CEUE] marine metagenome genome assembly TARA_133_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 312 240 - Thr CGT [ENA] ¢þ
>WENV170474937 CEVH01187049 [CEVH] marine metagenome genome assembly TARA_141_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 631 559 - Thr CGT [ENA] ¢þ
>WENV170489296 CEVP01069960 [CEVP] marine metagenome genome assembly TARA_150_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 152 224 + Thr CGT [ENA] ¢þ
>WENV170497442 CEVS01186554 [CEVS] marine metagenome genome assembly TARA_151_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 493 421 - Thr CGT [ENA] ¢þ
>WENV170503775 CEVV01129527 [CEVV] marine metagenome genome assembly TARA_152_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 218 290 + Thr CGT [ENA] ¢þ
>WENV170504926 CEVW01014454 [CEVW] marine metagenome genome assembly TARA_149_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 5959 6031 + Thr CGT [ENA] ¢þ
>WENV170514433 CEWA01085106 [CEWA] marine metagenome genome assembly TARA_038_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 369 297 - Thr CGT [ENA] ¢þ
>WENV170533150 CEWO01100779 [CEWO] marine metagenome genome assembly TARA_145_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 161 236 + Thr CGT [ENA] ¢þ
>WENV170770016 LXNH01081463 [LXNH] seawater metagenome; marine seawater 861 787 - Thr CGT [ENA] ¢þ
>WENV170786672 MDSV01006960 [MDSV] marine metagenome; seawater 404 476 + Thr CGT [ENA] ¢þ
>WENV170790701 MDSV01070490 [MDSV] marine metagenome; seawater 74 2 - Thr CGT [ENA] ¢þ
>WENV170794952 MDSV01140201 [MDSV] marine metagenome; seawater 3507 3435 - Thr CGT [ENA] ¢þ
>WENV170798841 MDSV01203312 [MDSV] marine metagenome; seawater 3056 3128 + Thr CGT [ENA] ¢þ
>WENV170799662 MDSV01217375 [MDSV] marine metagenome; seawater 343 271 - Thr CGT [ENA] ¢þ
>WENV170800603 MDSV01232974 [MDSV] marine metagenome; seawater 6 81 + Thr CGT [ENA] ¢þ
>WENV170805477 MDSW01065530 [MDSW] marine metagenome; seawater 5482 5410 - Thr CGT [ENA] ¢þ
>WENV170816944 MDSX01040815 [MDSX] marine metagenome; seawater 2991 3063 + Thr CGT [ENA] ¢þ
>WENV170829760 MDSZ01014473 [MDSZ] marine metagenome; seawater 3046 2974 - Thr CGT [ENA] ¢þ
>WENV170833106 MDSZ01074119 [MDSZ] marine metagenome; seawater 2520 2592 + Thr CGT [ENA] ¢þ
>WENV170834915 MDSZ01105000 [MDSZ] marine metagenome; seawater 3978 3906 - Thr CGT [ENA] ¢þ
>WENV170846659 MDTA01046360 [MDTA] marine metagenome; seawater 110 38 - Thr CGT [ENA] ¢þ
>WENV170849899 MDTA01104348 [MDTA] marine metagenome; seawater 1652 1580 - Thr CGT [ENA] ¢þ
>WENV170850688 MDTA01118802 [MDTA] marine metagenome; seawater 672 744 + Thr CGT [ENA] ¢þ
>WENV170853944 MDTA01179379 [MDTA] marine metagenome; seawater 2888 2960 + Thr CGT [ENA] ¢þ
>WENV170882943 MDTC01156696 [MDTC] marine metagenome; seawater 156 84 - Thr CGT [ENA] ¢þ
>WENV023277 AACY020712827 Marine microbial communities from Global Ocean Sampling (GOS) 587 662 + Thr CGT [ENA]
>SRA1002611 SRR001663.142381 Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219) 29 101 + Thr CGT [SRA]
>SRA1002674 SRR001663.344526 Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219) 29 101 + Thr CGT [SRA]
>W1810475321 QAIY01000578 Gammaproteobacteria Pseudomonas sp. HMWF031 [QAIY] 259 187 - Thr CGT [ENA] ¡û
>W1810529374 QCUL01000013 Cyanobacteriota Synechococcus sp. AG-679-C18 [QCUL] 8028 7956 - Thr CGT [ENA] ¡û
>W1810529727 QCUZ01000007 Cyanobacteriota Synechococcus sp. AG-683-A03 [QCUZ] 1816 1744 - Thr CGT [ENA] ¡û
>W1810529839 QCVD01000035 Cyanobacteriota Synechococcus sp. AG-683-C23 [QCVD] 7999 8071 + Thr CGT [ENA] ¡û
>W1810529970 QCVL01000002 Cyanobacteriota Synechococcus sp. AG-686-A05 [QCVL] 27335 27407 + Thr CGT [ENA] ¡û
>W1810529991 QCVM01000019 Cyanobacteriota Synechococcus sp. AG-686-B21 [QCVM] 3721 3649 - Thr CGT [ENA] ¡û
>W1810530051 QCVQ01000011 Cyanobacteriota Synechococcus sp. AG-686-F08 [QCVQ] 2830 2758 - Thr CGT [ENA] ¡û
>C151009025 CP006269 Cyanobacteriota Synechococcus sp. KORDI-100 [CP006269] 2283699 2283771 + Thr CGT [Ensembl] ¡û
>C151009061 CP006270 Cyanobacteriota Synechococcus sp. KORDI-49 [CP006270] 947469 947541 + Thr CGT [Ensembl] ¡û
>ENV09001619 ABVN01020799 Marine metagenome gcontig_contig00001 29 101 + Thr CGT [ENA] ¡û
>W11180847 AGIK01000004 Cyanobacteriota Synechococcus sp. WH 8016 [AGIK] 106045 106117 + Thr CGT [ENA] ¡û
>C161037954 CP011941 Cyanobacteriota Synechococcus sp. WH 8020 [CP011941] 1645705 1645780 + Thr CGT [Ensembl] ¡û
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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