tRNA genes clustered and arranged according to each identical group

Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)

Anticodon = GAC

HIT: 2 Group(s).
Download Sequence Representative sequence of each cluster
View ClustalW result
Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.460138 (118 seq.)
>WENV011836 AACY020322674 Marine microbial communities from Global Ocean Sampling (GOS) 386 461 + Val GAC [ENA]
>WENV180104292 OAPC01000801 [OAPC] marine metagenome; na 3274 3199 - Val GAC [ENA] ¢þ
>WENV180115708 OAPT01023529 [OAPT] marine metagenome; seawater 94 168 + Val GAC [ENA] ¢þ
>WENV180374556 OBOK01000174 [OBOK] marine metagenome; seawater 946 1021 + Val GAC [ENA] ¢þ
>WENV180384492 OBOY01000359 [OBOY] marine metagenome; Sterile flask 2517 2592 + Val GAC [ENA] ¢þ
>WENV180385700 OBPB01000064 [OBPB] marine metagenome; Sterile flask 6593 6518 - Val GAC [ENA] ¢þ
>WENV180385776 OBPB01000539 [OBPB] marine metagenome; Sterile flask 6130 6055 - Val GAC [ENA] ¢þ
>WENV180387280 OBPE01000867 [OBPE] marine metagenome; Sterile flask 318 393 + Val GAC [ENA] ¢þ
>WENV180387750 OBPG01000246 [OBPG] marine metagenome; Sterile flask 3794 3719 - Val GAC [ENA] ¢þ
>WENV180389086 OBPI01028558 [OBPI] marine metagenome; Sterile flask 259 334 + Val GAC [ENA] ¢þ
>WENV180390317 OBPK01093836 [OBPK] marine metagenome; Sterile flask 95 170 + Val GAC [ENA] ¢þ
>WENV180390751 OBPL01017834 [OBPL] marine metagenome; Sterivex filter 245 170 - Val GAC [ENA] ¢þ
>WENV180587611 OCOO01017071 [OCOO] marine metagenome; seawater 439 514 + Val GAC [ENA] ¢þ
>WENV180593108 OCOX01000909 [OCOX] marine metagenome; ENVO:00002010 352 427 + Val GAC [ENA] ¢þ
>WENV180638169 OCRH01025779 [OCRH] marine metagenome; ENVO_00002010 164 89 - Val GAC [ENA] ¢þ
>WENV180638421 OCRI01000072 [OCRI] marine metagenome; Sterile flask 16016 15941 - Val GAC [ENA] ¢þ
>WENV180638456 OCRI01000175 [OCRI] marine metagenome; Sterile flask 2046 1971 - Val GAC [ENA] ¢þ
>WENV017988 AACY020497399 Marine microbial communities from Global Ocean Sampling (GOS) 1490 1565 + Val GAC [ENA]
>WENV018024 AACY020498145 Marine microbial communities from Global Ocean Sampling (GOS) 1426 1351 - Val GAC [ENA]
>WENV183622264 OOFV01019481 [OOFV] marine metagenome; seawater 718 643 - Val GAC [ENA] ¢þ
>WENV183631443 OOGU01115137 [OOGU] marine metagenome; sea ice 252 325 + Val GAC [ENA] ¢þ
>WENV183810659 PVBE011504270 [PVBE] marine metagenome; water 89 14 - Val GAC [ENA] ¢þ
>WENV170113095 CENF01034634 [CENF] marine metagenome genome assembly TARA_004_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 954 879 - Val GAC [ENA] ¢þ
>WENV170129158 CENQ01067298 [CENQ] marine metagenome genome assembly TARA_031_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 512 437 - Val GAC [ENA] ¢þ
>WENV170149422 CEOC01027978 [CEOC] marine metagenome genome assembly TARA_036_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 800 725 - Val GAC [ENA] ¢þ
>WENV170149779 CEOC01054875 [CEOC] marine metagenome genome assembly TARA_036_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 199 124 - Val GAC [ENA] ¢þ
>WENV170163531 CEOM01143699 [CEOM] marine metagenome genome assembly TARA_004_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 206 281 + Val GAC [ENA] ¢þ
>WENV170163887 CEOM01183513 [CEOM] marine metagenome genome assembly TARA_004_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 320 395 + Val GAC [ENA] ¢þ
>WENV170167747 CEOP01034328 [CEOP] marine metagenome genome assembly TARA_009_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 291 216 - Val GAC [ENA] ¢þ
>WENV170179022 CEOV01111021 [CEOV] marine metagenome genome assembly TARA_062_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 632 557 - Val GAC [ENA] ¢þ
>WENV170180731 CEOW01126583 [CEOW] marine metagenome genome assembly TARA_058_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 307 382 + Val GAC [ENA] ¢þ
>WENV170195488 CEPJ01139650 [CEPJ] marine metagenome genome assembly TARA_048_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 586 661 + Val GAC [ENA] ¢þ
>WENV170254880 CEQW01031245 [CEQW] marine metagenome genome assembly TARA_070_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 336 411 + Val GAC [ENA] ¢þ
>WENV170256329 CEQX01074868 [CEQX] marine metagenome genome assembly TARA_070_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 464 539 + Val GAC [ENA] ¢þ
>WENV170286512 CERW01102624 [CERW] marine metagenome genome assembly TARA_066_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 276 201 - Val GAC [ENA] ¢þ
>WENV170304644 CESI01064899 [CESI] marine metagenome genome assembly TARA_082_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 802 877 + Val GAC [ENA] ¢þ
>WENV170305647 CESI01155627 [CESI] marine metagenome genome assembly TARA_082_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1512 1587 + Val GAC [ENA] ¢þ
>WENV170314197 CESN01099327 [CESN] marine metagenome genome assembly TARA_098_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 385 460 + Val GAC [ENA] ¢þ
>WENV170316964 CESP01100016 [CESP] marine metagenome genome assembly TARA_099_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 250 175 - Val GAC [ENA] ¢þ
>WENV170319719 CESQ01192663 [CESQ] marine metagenome genome assembly TARA_100_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 992 917 - Val GAC [ENA] ¢þ
>WENV170328764 CESV01044863 [CESV] marine metagenome genome assembly TARA_100_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 7744 7669 - Val GAC [ENA] ¢þ
>WENV170341896 CETD01050103 [CETD] marine metagenome genome assembly TARA_110_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 959 884 - Val GAC [ENA] ¢þ
>WENV170344520 CETE01111751 [CETE] marine metagenome genome assembly TARA_109_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 210 285 + Val GAC [ENA] ¢þ
>WENV170376165 CETU01042602 [CETU] marine metagenome genome assembly TARA_142_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 4522 4597 + Val GAC [ENA] ¢þ
>WENV170381424 CETW01162021 [CETW] marine metagenome genome assembly TARA_052_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 268 343 + Val GAC [ENA] ¢þ
>WENV170391337 CEUA01223239 [CEUA] marine metagenome genome assembly TARA_132_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 480 555 + Val GAC [ENA] ¢þ
>WENV170407290 CEUH01124187 [CEUH] marine metagenome genome assembly TARA_137_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 265 340 + Val GAC [ENA] ¢þ
>WENV170412105 CEUK01009887 [CEUK] marine metagenome genome assembly TARA_125_MIX_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 11052 11127 + Val GAC [ENA] ¢þ
>WENV170413209 CEUK01089348 [CEUK] marine metagenome genome assembly TARA_125_MIX_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 897 972 + Val GAC [ENA] ¢þ
>WENV170419005 CEUM01087231 [CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 8259 8334 + Val GAC [ENA] ¢þ
>WENV170430011 CEUR01081615 [CEUR] marine metagenome genome assembly TARA_123_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1904 1829 - Val GAC [ENA] ¢þ
>WENV170438099 CEUU01098277 [CEUU] marine metagenome genome assembly TARA_122_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 301 376 + Val GAC [ENA] ¢þ
>WENV170439004 CEUV01007558 [CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 5741 5666 - Val GAC [ENA] ¢þ
>WENV170442560 CEUW01047441 [CEUW] marine metagenome genome assembly TARA_122_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 454 529 + Val GAC [ENA] ¢þ
>WENV170485224 CEVN01086654 [CEVN] marine metagenome genome assembly TARA_142_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 4604 4679 + Val GAC [ENA] ¢þ
>WENV170494088 CEVR01053005 [CEVR] marine metagenome genome assembly TARA_148_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1867 1792 - Val GAC [ENA] ¢þ
>WENV170496614 CEVS01078578 [CEVS] marine metagenome genome assembly TARA_151_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 161 236 + Val GAC [ENA] ¢þ
>WENV170499039 CEVT01106310 [CEVT] marine metagenome genome assembly TARA_150_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 244 169 - Val GAC [ENA] ¢þ
>WENV170500536 CEVU01021785 [CEVU] marine metagenome genome assembly TARA_151_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 4307 4232 - Val GAC [ENA] ¢þ
>WENV170521758 CEWG01033696 [CEWG] marine metagenome genome assembly TARA_102_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 7422 7497 + Val GAC [ENA] ¢þ
>WENV170521975 CEWG01053847 [CEWG] marine metagenome genome assembly TARA_102_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 834 909 + Val GAC [ENA] ¢þ
>WENV170528059 CEWJ01017318 [CEWJ] marine metagenome genome assembly TARA_128_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 2268 2343 + Val GAC [ENA] ¢þ
>WENV170569784 FLMP01301970 [FLMP] seawater metagenome; seawater 333 408 + Val GAC [ENA] ¢þ
>WENV170569990 FLMP01375629 [FLMP] seawater metagenome; seawater 165 240 + Val GAC [ENA] ¢þ
>WENV170578434 FUFK010017090 [FUFK] metagenome; unknown 75086 75161 + Val GAC [ENA] ¢þ
>WENV170579020 FUFK010037765 [FUFK] metagenome; unknown 20172 20097 - Val GAC [ENA] ¢þ
>WENV170584675 FUFK010229363 [FUFK] metagenome; unknown 1 76 + Val GAC [ENA] ¢þ
>WENV170585815 FUFK010329569 [FUFK] metagenome; unknown 76 1 - Val GAC [ENA] ¢þ
>WENV170589419 FUFK010641490 [FUFK] metagenome; unknown 1014 939 - Val GAC [ENA] ¢þ
>WENV170591767 FUFK010787661 [FUFK] metagenome; unknown 3522 3597 + Val GAC [ENA] ¢þ
>WENV170594382 FUFK011297233 [FUFK] metagenome; unknown 205 280 + Val GAC [ENA] ¢þ
>WENV170596276 FUFK012161527 [FUFK] metagenome; unknown 76 1 - Val GAC [ENA] ¢þ
>WENV170605437 FUWD010485813 [FUWD] metagenome; unknown 224 299 + Val GAC [ENA] ¢þ
>WENV170763948 LWDU01025508 [LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater 19 91 + Val GAC [ENA] ¢þ
>WENV170786973 MDSV01011298 [MDSV] marine metagenome; seawater 26259 26184 - Val GAC [ENA] ¢þ
>WENV170787390 MDSV01017918 [MDSV] marine metagenome; seawater 7570 7495 - Val GAC [ENA] ¢þ
>WENV170788027 MDSV01026585 [MDSV] marine metagenome; seawater 2469 2394 - Val GAC [ENA] ¢þ
>WENV170788269 MDSV01030719 [MDSV] marine metagenome; seawater 2781 2706 - Val GAC [ENA] ¢þ
>WENV170788976 MDSV01042595 [MDSV] marine metagenome; seawater 963 1038 + Val GAC [ENA] ¢þ
>WENV170801518 MDSV01248393 [MDSV] marine metagenome; seawater 2706 2631 - Val GAC [ENA] ¢þ
>WENV170819601 MDSX01095810 [MDSX] marine metagenome; seawater 2 77 + Val GAC [ENA] ¢þ
>WENV170825663 MDSY01097453 [MDSY] marine metagenome; seawater 12066 11991 - Val GAC [ENA] ¢þ
>WENV170827614 MDSY01132904 [MDSY] marine metagenome; seawater 556 631 + Val GAC [ENA] ¢þ
>WENV170827729 MDSY01135150 [MDSY] marine metagenome; seawater 8395 8320 - Val GAC [ENA] ¢þ
>WENV170830244 MDSZ01023479 [MDSZ] marine metagenome; seawater 1060 985 - Val GAC [ENA] ¢þ
>WENV170834933 MDSZ01105276 [MDSZ] marine metagenome; seawater 418 493 + Val GAC [ENA] ¢þ
>WENV170837656 MDSZ01153281 [MDSZ] marine metagenome; seawater 2125 2050 - Val GAC [ENA] ¢þ
>WENV170846011 MDTA01034818 [MDTA] marine metagenome; seawater 3640 3565 - Val GAC [ENA] ¢þ
>WENV170857632 MDTB01011448 [MDTB] marine metagenome; seawater 3269 3344 + Val GAC [ENA] ¢þ
>WENV170877636 MDTC01061724 [MDTC] marine metagenome; seawater 3030 3105 + Val GAC [ENA] ¢þ
>WENV170878726 MDTC01082213 [MDTC] marine metagenome; seawater 1889 1814 - Val GAC [ENA] ¢þ
>WENV170886927 MDTC01230568 [MDTC] marine metagenome; seawater 4653 4578 - Val GAC [ENA] ¢þ
>WENV170888816 MDTC01264593 [MDTC] marine metagenome; seawater 80 5 - Val GAC [ENA] ¢þ
>WENV170890614 MDTD01012970 [MDTD] marine metagenome; seawater 15401 15326 - Val GAC [ENA] ¢þ
>WENV170900290 MDTD01152240 [MDTD] marine metagenome; seawater 2 77 + Val GAC [ENA] ¢þ
>WENV170900574 MDTD01156269 [MDTD] marine metagenome; seawater 10812 10737 - Val GAC [ENA] ¢þ
>WENV170904832 MDTE01017316 [MDTE] marine metagenome; seawater 5206 5131 - Val GAC [ENA] ¢þ
>WENV170905274 MDTE01023637 [MDTE] marine metagenome; seawater 19 94 + Val GAC [ENA] ¢þ
>WENV170907746 MDTE01055935 [MDTE] marine metagenome; seawater 19 94 + Val GAC [ENA] ¢þ
>WENV170917718 MDTE01196443 [MDTE] marine metagenome; seawater 1681 1606 - Val GAC [ENA] ¢þ
>WENV170924183 MDTG01061505 [MDTG] marine metagenome; seawater 2245 2320 + Val GAC [ENA] ¢þ
>WENV170927857 MDTG01124106 [MDTG] marine metagenome; seawater 81 6 - Val GAC [ENA] ¢þ
>WENV170928547 MDTG01135542 [MDTG] marine metagenome; seawater 2796 2721 - Val GAC [ENA] ¢þ
>WENV170933062 MDTG01214616 [MDTG] marine metagenome; seawater 13 88 + Val GAC [ENA] ¢þ
>WENV170938952 MDTG01317528 [MDTG] marine metagenome; seawater 7023 7098 + Val GAC [ENA] ¢þ
>WENV170940183 MDTG01338998 [MDTG] marine metagenome; seawater 44 119 + Val GAC [ENA] ¢þ
>WENV170940848 MDTG01350236 [MDTG] marine metagenome; seawater 4249 4324 + Val GAC [ENA] ¢þ
>WENV170950161 MEHZ011481391 [MEHZ] marine metagenome; marine surface water 353 278 - Val GAC [ENA] ¢þ
>WENV170950787 MEHZ011517413 [MEHZ] marine metagenome; marine surface water 179 254 + Val GAC [ENA] ¢þ
>WENV170951748 MEHZ011567608 [MEHZ] marine metagenome; marine surface water 1128 1053 - Val GAC [ENA] ¢þ
>WENV170952958 MEHZ011622430 [MEHZ] marine metagenome; marine surface water 39700 39775 + Val GAC [ENA] ¢þ
>WENV022732 AACY020670070 Marine microbial communities from Global Ocean Sampling (GOS) 527 452 - Val GAC [ENA]
>SRA1002617 SRR001663.164543 Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219) 17 92 + Val GAC [SRA]
>WENV028777 AACY021144862 Marine microbial communities from Global Ocean Sampling (GOS) 445 370 - Val GAC [ENA]
>WENV063429 AACY023504535 Marine microbial communities from Global Ocean Sampling (GOS) 282 357 + Val GAC [ENA]
>WENV064232 AACY023533594 Marine microbial communities from Global Ocean Sampling (GOS) 378 453 + Val GAC [ENA]
>WENV066513 AACY023651440 Marine microbial communities from Global Ocean Sampling (GOS) 649 724 + Val GAC [ENA]
>WENV009080 AACY020244164 Marine microbial communities from Global Ocean Sampling (GOS) 912 837 - Val GAC [ENA]
Identical group No.704889 (1 seq.)
>SRA1002635 SRR001663.209685 Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219) 30 104 + Val GAC [SRA]
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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