tRNA genes clustered and arranged according to each identical group

Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)

Anticodon = GCC

HIT: 2 Group(s).
Download Sequence Representative sequence of each cluster
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Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
 Sequence ID Genome ID
(or Accession No.)		 Phylum/Class
(Sample source for ENV)		 Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.657822 (74 seq.)
>WENV016078 AACY020454792 Marine microbial communities from Global Ocean Sampling (GOS) 1868 1942 + Gly GCC [ENA]
>WENV180099919 OANK01003848 [OANK] marine metagenome; ENVO:00002010 808 734 - Gly GCC [ENA] ¢þ
>WENV180103386 OAPA01026611 [OAPA] marine metagenome; ENVO:00002010 252 326 + Gly GCC [ENA] ¢þ
>WENV180104084 OAPB01075587 [OAPB] marine metagenome; Sterile flask 173 247 + Gly GCC [ENA] ¢þ
>WENV180113317 OAPQ01028937 [OAPQ] marine metagenome; ENVO: 00002149 199 273 + Gly GCC [ENA] ¢þ
>WENV180113957 OAPR01071584 [OAPR] marine metagenome; seawater 451 377 - Gly GCC [ENA] ¢þ
>WENV180114924 OAPS01074297 [OAPS] marine metagenome; sea water 450 524 + Gly GCC [ENA] ¢þ
>WENV180209325 OBAK01070993 [OBAK] marine metagenome; ENVO.00002150 125 199 + Gly GCC [ENA] ¢þ
>WENV180359339 OBNR01045896 [OBNR] marine metagenome; Seawater_00002010_00002149 258 184 - Gly GCC [ENA] ¢þ
>WENV180359745 OBNS01023926 [OBNS] marine metagenome; Seawater 444 518 + Gly GCC [ENA] ¢þ
>WENV180362510 OBNX01001653 [OBNX] marine metagenome; ENVO:00002010 460 386 - Gly GCC [ENA] ¢þ
>WENV180363912 OBNZ01023337 [OBNZ] marine metagenome; ENVO:00002010 159 85 - Gly GCC [ENA] ¢þ
>WENV180365711 OBOC01016427 [OBOC] marine metagenome; ocean water 397 323 - Gly GCC [ENA] ¢þ
>WENV180366932 OBOE01000246 [OBOE] marine metagenome; ENVO:00002010 3401 3475 + Gly GCC [ENA] ¢þ
>WENV180369795 OBOH01002964 [OBOH] marine metagenome; ENVO:00002010 1318 1392 + Gly GCC [ENA] ¢þ
>WENV180380056 OBOQ01001019 [OBOQ] marine metagenome; Fridge 1874 1948 + Gly GCC [ENA] ¢þ
>WENV180388032 OBPG01033499 [OBPG] marine metagenome; Sterile flask 239 313 + Gly GCC [ENA] ¢þ
>WENV180388522 OBPH01017455 [OBPH] marine metagenome; Sterile flask 151 225 + Gly GCC [ENA] ¢þ
>WENV180390009 OBPK01013068 [OBPK] marine metagenome; Sterile flask 636 562 - Gly GCC [ENA] ¢þ
>WENV180390608 OBPL01002664 [OBPL] marine metagenome; Sterivex filter 1334 1408 + Gly GCC [ENA] ¢þ
>WENV180391585 OBPN01009778 [OBPN] marine metagenome; seawater 499 573 + Gly GCC [ENA] ¢þ
>WENV180392153 OBPO01013381 [OBPO] marine metagenome; seawater 508 582 + Gly GCC [ENA] ¢þ
>WENV180394545 OBPS01016177 [OBPS] marine metagenome; ENVO:00002010 seawater 141 67 - Gly GCC [ENA] ¢þ
>WENV180395290 OBPT01006430 [OBPT] marine metagenome; ENVO:00002010 seawater 572 498 - Gly GCC [ENA] ¢þ
>WENV180396069 OBPU01027069 [OBPU] marine metagenome; ENVO:00002010 393 319 - Gly GCC [ENA] ¢þ
>WENV180585378 OCOL01003848 [OCOL] marine metagenome; ENVO:00002010 808 734 - Gly GCC [ENA] ¢þ
>WENV180586658 OCOM01175446 [OCOM] marine metagenome; seawater 153 227 + Gly GCC [ENA] ¢þ
>WENV180587327 OCON01182483 [OCON] marine metagenome; seawater 76 2 - Gly GCC [ENA] ¢þ
>WENV180593137 OCOX01001851 [OCOX] marine metagenome; ENVO:00002010 1424 1498 + Gly GCC [ENA] ¢þ
>WENV180594815 OCPA01014656 [OCPA] marine metagenome; ENVO:00002010 254 180 - Gly GCC [ENA] ¢þ
>WENV180595027 OCPB01004467 [OCPB] marine metagenome; ENVO:00002149 300 226 - Gly GCC [ENA] ¢þ
>WENV180636350 OCRF01001611 [OCRF] marine metagenome; niskin bottle 415 341 - Gly GCC [ENA] ¢þ
>WENV180638951 OCRI01060659 [OCRI] marine metagenome; Sterile flask 292 218 - Gly GCC [ENA] ¢þ
>WENV181092536 OEBK01006368 [OEBK] marine metagenome; ENVO:00002010 for 'seawater 398 324 - Gly GCC [ENA] ¢þ
>WENV182545600 OJBN01008711 [OJBN] seawater metagenome; Sea water 152 78 - Gly GCC [ENA] ¢þ
>WENV182556350 OJDG01005155 [OJDG] seawater metagenome; Sea water 300 226 - Gly GCC [ENA] ¢þ
>WENV170119132 CENJ01114744 [CENJ] marine metagenome genome assembly TARA_009_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 261 187 - Gly GCC [ENA] ¢þ
>WENV170291257 CESA01104923 [CESA] marine metagenome genome assembly TARA_078_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 289 215 - Gly GCC [ENA] ¢þ
>WENV170315080 CESO01062345 [CESO] marine metagenome genome assembly TARA_093_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 210 136 - Gly GCC [ENA] ¢þ
>WENV170335272 CESZ01046071 [CESZ] marine metagenome genome assembly TARA_078_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 207 133 - Gly GCC [ENA] ¢þ
>WENV170344067 CETE01063062 [CETE] marine metagenome genome assembly TARA_109_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 132 206 + Gly GCC [ENA] ¢þ
>WENV170400914 CEUE01162874 [CEUE] marine metagenome genome assembly TARA_133_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 229 155 - Gly GCC [ENA] ¢þ
>WENV170608664 FUWD011046599 [FUWD] metagenome; unknown 11 85 + Gly GCC [ENA] ¢þ
>WENV170611458 FUWD012322294 [FUWD] metagenome; unknown 7 81 + Gly GCC [ENA] ¢þ
>WENV170767380 LXNH01001045 [LXNH] seawater metagenome; marine seawater 2176 2250 + Gly GCC [ENA] ¢þ
>WENV170769447 LXNH01054683 [LXNH] seawater metagenome; marine seawater 1060 986 - Gly GCC [ENA] ¢þ
>WENV170769737 LXNH01067471 [LXNH] seawater metagenome; marine seawater 1272 1198 - Gly GCC [ENA] ¢þ
>WENV170789750 MDSV01054778 [MDSV] marine metagenome; seawater 1273 1347 + Gly GCC [ENA] ¢þ
>WENV170824103 MDSY01069666 [MDSY] marine metagenome; seawater 2602 2676 + Gly GCC [ENA] ¢þ
>WENV170840873 MDSZ01212768 [MDSZ] marine metagenome; seawater 6508 6582 + Gly GCC [ENA] ¢þ
>WENV170892909 MDTD01044808 [MDTD] marine metagenome; seawater 2488 2414 - Gly GCC [ENA] ¢þ
>WENV170917849 MDTE01198559 [MDTE] marine metagenome; seawater 4503 4429 - Gly GCC [ENA] ¢þ
>WENV170922952 MDTG01040450 [MDTG] marine metagenome; seawater 77 3 - Gly GCC [ENA] ¢þ
>WENV170938606 MDTG01311620 [MDTG] marine metagenome; seawater 6273 6347 + Gly GCC [ENA] ¢þ
>WENV170943382 MDTG01395998 [MDTG] marine metagenome; seawater 25 99 + Gly GCC [ENA] ¢þ
>WENV170948168 MEHZ011101123 [MEHZ] marine metagenome; marine surface water 835 909 + Gly GCC [ENA] ¢þ
>WENV002375 AACY020066405 Marine microbial communities from Global Ocean Sampling (GOS) 1781 1707 - Gly GCC [ENA]
>SRA1002683 SRR001663.367705 Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219) 12 86 + Gly GCC [SRA]
>W1810515738 QBYK01000004 Alphaproteobacteria SAR116 cluster bacterium AG-325-I21 [QBYK] 94 20 - Gly GCC [ENA] ¡û
>W1810515818 QBYN01000040 Alphaproteobacteria SAR116 cluster bacterium AG-325-K06 [QBYN] 7529 7603 + Gly GCC [ENA] ¡û
>W1810526824 QCPZ01000001 Alphaproteobacteria SAR116 cluster bacterium AG-447-A06 [QCPZ] 165289 165363 + Gly GCC [ENA] ¡û
>WENV028958 AACY021159300 Marine microbial communities from Global Ocean Sampling (GOS) 913 839 - Gly GCC [ENA]
>C10110235 CP001751 Alphaproteobacteria Candidatus Puniceispirillum marinum IMCC1322 [CP001751] 1924174 1924100 - Gly GCC [Ensembl] ¡û
>WENV050386 AACY022867101 Marine microbial communities from Global Ocean Sampling (GOS) 479 405 - Gly GCC [ENA]
>WENV055626 AACY023233711 Marine microbial communities from Global Ocean Sampling (GOS) 1078 1004 - Gly GCC [ENA]
>WENV056577 AACY023259955 Marine microbial communities from Global Ocean Sampling (GOS) 1210 1136 - Gly GCC [ENA]
>WENV060466 AACY023400033 Marine microbial communities from Global Ocean Sampling (GOS) 529 455 - Gly GCC [ENA]
>WENV065964 AACY023622642 Marine microbial communities from Global Ocean Sampling (GOS) 144 218 + Gly GCC [ENA]
>WENV073195 AACY023916632 Marine microbial communities from Global Ocean Sampling (GOS) 655 729 + Gly GCC [ENA]
>W1610597434 LFEV01000002 Alphaproteobacteria Alphaproteobacteria bacterium casp-alpha10 [LFEV] 97 23 - Gly GCC [ENA] ¡û
>W1610597448 LFEV01000034 Alphaproteobacteria Alphaproteobacteria bacterium casp-alpha10 [LFEV] 18714 18788 + Gly GCC [ENA] ¡û
>WENV073753 AACY023936531 Marine microbial communities from Global Ocean Sampling (GOS) 600 526 - Gly GCC [ENA]
>W1710718758 LFEV01000002 Alphaproteobacteria Alphaproteobacteria bacterium casp-alpha10 [LFEV] 97 23 - Gly GCC [ENA] ¡û
>W1710718772 LFEV01000034 Alphaproteobacteria Alphaproteobacteria bacterium casp-alpha10 [LFEV] 18714 18788 + Gly GCC [ENA] ¡û
Identical group No.704888 (1 seq.)
>SRA1002607 SRR001663.134883 Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219) 110 36 - Gly GCC [SRA]
Select
 Sequence ID Genome ID
(or Accession No.)		 Phylum/Class
(Sample source for ENV)		 Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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