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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
Anticodon = GGA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.21856 (3 seq.)
>WENV180210161
OBAL01132134
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
125
36
-
Ser
GGA
[ENA]
¢þ
>WENV181093004
OEBK01146738
[OEBK] marine metagenome; ENVO:00002010 for 'seawater
318
229
-
Ser
GGA
[ENA]
¢þ
>SRA1002596
SRR001663.100800
Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)
93
4
-
Ser
GGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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