tRNA genes clustered and arranged according to each identical group

Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219)

Anticodon = TCT

HIT: 2 Group(s).
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Select
 Sequence ID Genome ID
(or Accession No.)		 Phylum/Class
(Sample source for ENV)		 Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.252575 (1 seq.)
>SRA1002679 SRR001663.358620 Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219) 76 -1 - Arg TCT [SRA]
Identical group No.283476 (49 seq.)
>C025142 CP000097 Cyanobacteriota Synechococcus sp. CC9902 [CP000097] 1726446 1726519 + Arg TCT [Ensembl] ¡û
>w019175 AATZ01000004 Cyanobacteriota Synechococcus sp. BL107 [AATZ] 173750 173672 - Arg TCT [ENA] ¡û
>WENV180057035 MPLW02076300 [MPLW] marine metagenome; 110 m water sample filtered on 0.2 um supor filter 1415 1340 - Arg TCT [ENA] ¢þ
>WENV180084510 MPMD02203289 [MPMD] marine metagenome; 120 m water sample filtered on 30 um supor filter 3 78 + Arg TCT [ENA] ¢þ
>WENV180100819 OAOT01000313 [OAOT] marine metagenome; Mesotrophic water 1450 1375 - Arg TCT [ENA] ¢þ
>WENV180113458 OAPQ01092460 [OAPQ] marine metagenome; ENVO: 00002149 190 115 - Arg TCT [ENA] ¢þ
>WENV180114375 OAPS01006868 [OAPS] marine metagenome; sea water 771 846 + Arg TCT [ENA] ¢þ
>WENV180114583 OAPS01021047 [OAPS] marine metagenome; sea water 527 602 + Arg TCT [ENA] ¢þ
>WENV180381925 OBOS01047659 [OBOS] marine metagenome; ENVO 00002150 358 433 + Arg TCT [ENA] ¢þ
>WENV180389352 OBPJ01005363 [OBPJ] marine metagenome; seawater 188 262 + Arg TCT [ENA] ¢þ
>WENV180392119 OBPO01008305 [OBPO] marine metagenome; seawater 416 490 + Arg TCT [ENA] ¢þ
>WENV180395360 OBPT01011674 [OBPT] marine metagenome; ENVO:00002010 seawater 358 432 + Arg TCT [ENA] ¢þ
>WENV180399641 OBQO01008398 [OBQO] marine metagenome; ENVO:00002010 628 702 + Arg TCT [ENA] ¢þ
>WENV180593714 OCOX01153172 [OCOX] marine metagenome; ENVO:00002010 136 61 - Arg TCT [ENA] ¢þ
>WENV181092729 OEBK01039240 [OEBK] marine metagenome; ENVO:00002010 for 'seawater 244 169 - Arg TCT [ENA] ¢þ
>WENV182545728 OJBN01018854 [OJBN] seawater metagenome; Sea water 907 832 - Arg TCT [ENA] ¢þ
>WENV182571133 OJFG01000597 [OJFG] seawater metagenome; Sea water 1195 1120 - Arg TCT [ENA] ¢þ
>WENV183060115 OLHW01015444 [OLHW] seawater metagenome; Sea water 79 154 + Arg TCT [ENA] ¢þ
>WENV183797222 PVBE010316483 [PVBE] marine metagenome; water 81 156 + Arg TCT [ENA] ¢þ
>WENV170147252 CENZ01125742 [CENZ] marine metagenome genome assembly TARA_025_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1406 1481 + Arg TCT [ENA] ¢þ
>WENV170274566 CERM01025586 [CERM] marine metagenome genome assembly TARA_067_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 700 775 + Arg TCT [ENA] ¢þ
>WENV170323579 CESS01009582 [CESS] marine metagenome genome assembly TARA_023_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1371 1296 - Arg TCT [ENA] ¢þ
>WENV170394387 CEUC01027887 [CEUC] marine metagenome genome assembly TARA_137_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 393 318 - Arg TCT [ENA] ¢þ
>WENV170399533 CEUE01023722 [CEUE] marine metagenome genome assembly TARA_133_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 958 1035 + Arg TCT [ENA] ¢þ
>WENV170498514 CEVT01044855 [CEVT] marine metagenome genome assembly TARA_150_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 558 483 - Arg TCT [ENA] ¢þ
>WENV170503126 CEVV01055532 [CEVV] marine metagenome genome assembly TARA_152_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1061 986 - Arg TCT [ENA] ¢þ
>WENV170504746 CEVW01000060 [CEVW] marine metagenome genome assembly TARA_149_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1074 999 - Arg TCT [ENA] ¢þ
>WENV170516020 CEWB01074556 [CEWB] marine metagenome genome assembly TARA_068_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 212 287 + Arg TCT [ENA] ¢þ
>WENV170531961 CEWO01010208 [CEWO] marine metagenome genome assembly TARA_145_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1992 2067 + Arg TCT [ENA] ¢þ
>WENV170532797 CEWO01070127 [CEWO] marine metagenome genome assembly TARA_145_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 347 423 + Arg TCT [ENA] ¢þ
>WENV170535535 CEWP01072288 [CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 769 694 - Arg TCT [ENA] ¢þ
>WENV170792773 MDSV01104705 [MDSV] marine metagenome; seawater 77 2 - Arg TCT [ENA] ¢þ
>WENV170799680 MDSV01217736 [MDSV] marine metagenome; seawater 3043 2968 - Arg TCT [ENA] ¢þ
>SRA1002583 SRR001663.68927 Synechococcus metagenome reveals major roles for horizontal gene transfer and plasmids in population diversity (SRP000219) 11 86 + Arg TCT [SRA]
>W1810528212 QCSO01000005 Cyanobacteriota Synechococcus sp. AG-670-F22 [QCSO] 35927 36002 + Arg TCT [ENA] ¡û
>W1810528530 QCTE01000001 Cyanobacteriota Synechococcus sp. AG-673-A03 [QCTE] 81058 81132 + Arg TCT [ENA] ¡û
>W1810528973 QCTV01000026 Cyanobacteriota Synechococcus sp. AG-676-C06 [QCTV] 84 9 - Arg TCT [ENA] ¡û
>W1810529280 QCUI01000002 Cyanobacteriota Synechococcus sp. AG-679-A04 [QCUI] 106912 106986 + Arg TCT [ENA] ¡û
>W1810529459 QCUN01000054 Cyanobacteriota Synechococcus sp. AG-679-E23 [QCUN] 4449 4375 - Arg TCT [ENA] ¡û
>W1810529761 QCVA01000021 Cyanobacteriota Synechococcus sp. AG-683-A22 [QCVA] 10783 10708 - Arg TCT [ENA] ¡û
>W1810529773 QCVB01000001 Cyanobacteriota Synechococcus sp. AG-683-B03 [QCVB] 11883 11808 - Arg TCT [ENA] ¡û
>W1810529828 QCVD01000017 Cyanobacteriota Synechococcus sp. AG-683-C23 [QCVD] 28450 28525 + Arg TCT [ENA] ¡û
>W1810529865 QCVF01000006 Cyanobacteriota Synechococcus sp. AG-683-G11 [QCVF] 49004 48929 - Arg TCT [ENA] ¡û
>W1810529966 QCVK01000046 Cyanobacteriota Synechococcus sp. AG-686-A03 [QCVK] 5396 5321 - Arg TCT [ENA] ¡û
>W1810529984 QCVM01000011 Cyanobacteriota Synechococcus sp. AG-686-B21 [QCVM] 30793 30868 + Arg TCT [ENA] ¡û
>WENV036087 AACY021749188 Marine microbial communities from Global Ocean Sampling (GOS) 655 577 - Arg TCT [ENA]
>W1511219338 JNBA01000029 Cyanobacteriota Prochlorococcus sp. MIT 0701 [JNBA] 55239 55314 + Arg TCT [ENA] ¡û
>W1511219388 JNBB01000044 Cyanobacteriota Prochlorococcus sp. MIT 0702 [JNBB] 47856 47781 - Arg TCT [ENA] ¡û
>W1511219400 JNBC01000011 Cyanobacteriota Prochlorococcus sp. MIT 0703 [JNBC] 83407 83332 - Arg TCT [ENA] ¡û
Select
 Sequence ID Genome ID
(or Accession No.)		 Phylum/Class
(Sample source for ENV)		 Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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