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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tampa Bay phage from induction experiment (SRP001112)
Anticodon = GCC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.512955 (13 seq.)
>WENV180212447
OBAN01047536
[OBAN] marine metagenome; ENVO 00002150
285
358
+
Gly
GCC
[ENA]
¢þ
>WENV180359560
OBNS01002177
[OBNS] marine metagenome; Seawater
670
597
-
Gly
GCC
[ENA]
¢þ
>WENV180365206
OBOB01035969
[OBOB] marine metagenome; ENVO:00002019, 'BRACKISH WATER
405
478
+
Gly
GCC
[ENA]
¢þ
>WENV180365854
OBOC01050341
[OBOC] marine metagenome; ocean water
92
165
+
Gly
GCC
[ENA]
¢þ
>WENV180391804
OBPN01050914
[OBPN] marine metagenome; seawater
95
22
-
Gly
GCC
[ENA]
¢þ
>WENV180590831
OCOU01017474
[OCOU] marine metagenome; Water
408
481
+
Gly
GCC
[ENA]
¢þ
>WENV183700811
PDMW01124569
[PDMW] marine metagenome; viruses from water sample; < 0.22 micron filtered, nuclease treated, low buoyant density
2014
1941
-
Gly
GCC
[ENA]
¢þ
>WENV183701447
PDMX01045395
[PDMX] marine metagenome; viruses from water sample; < 0.22 micron filtered, nuclease treated
226
153
-
Gly
GCC
[ENA]
¢þ
>WENV170270368
CERI01084242
[CERI] marine metagenome genome assembly TARA_067_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
76
1
-
Gly
GCC
[ENA]
¢þ
>WENV170536582
CEWP01228558
[CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
496
421
-
Gly
GCC
[ENA]
¢þ
>WENV170818242
MDSX01066730
[MDSX] marine metagenome; seawater
203
278
+
Gly
GCC
[ENA]
¢þ
>SRA1013851
SRR023774.98663
Tampa Bay phage from induction experiment (SRP001112)
28
103
+
Gly
GCC
[SRA]
>WENV058740
AACY023339984
Marine microbial communities from Global Ocean Sampling (GOS)
167
92
-
Gly
GCC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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