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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tampa Bay phage from induction experiment (SRP001112)
Anticodon = GTA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.186024 (9 seq.)
>WENV180590981
OCOU01055209
[OCOU] marine metagenome; Water
174
257
+
Tyr
GTA
[ENA]
¢þ
>WENV181845456
OGVX01002770
[OGVX] freshwater metagenome; freshwater
534
615
+
Tyr
GTA
[ENA]
¢þ
>WENV181848004
OGVZ01001297
[OGVZ] freshwater metagenome; freshwater
1451
1368
-
Tyr
GTA
[ENA]
¢þ
>WENV181858092
OGWP01002747
[OGWP] freshwater metagenome; freshwater
2111
2028
-
Tyr
GTA
[ENA]
¢þ
>WENV170123992
CENO01098439
[CENO] marine metagenome genome assembly TARA_033_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
888
969
+
Tyr
GTA
[ENA]
¢þ
>PHG181002293
KU686211
Myoviridae
Synechococcus phage S-WAM2 (KU686211)
18369
18450
+
Tyr
GTA
[ENA]
¡û
>PHG14100134
FM207411
Myoviridae
Synechococcus phage S-RSM4 PH15 (FM207411)
176203
176122
-
Tyr
GTA
[ENA]
¡û
>SRA1013828
SRR023774.43225
Tampa Bay phage from induction experiment (SRP001112)
27
109
+
Tyr
GTA
[SRA]
>SRA1013869
SRR023774.185011
Tampa Bay phage from induction experiment (SRP001112)
27
109
+
Tyr
GTA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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