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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tampa Bay phage from induction experiment (SRP001112)
Anticodon = GTT
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.422548 (1 seq.)
>SRA1013892
SRR023774.275223
Tampa Bay phage from induction experiment (SRP001112)
23
100
+
Asn
GTT
[SRA]
Identical group No.567030 (5 seq.)
>WENV180370627
OBOH01152253
[OBOH] marine metagenome; ENVO:00002010
358
283
-
Asn
GTT
[ENA]
¢þ
>WENV180590836
OCOU01017881
[OCOU] marine metagenome; Water
264
189
-
Asn
GTT
[ENA]
¢þ
>SRA1013845
SRR023774.84220
Tampa Bay phage from induction experiment (SRP001112)
26
101
+
Asn
GTT
[SRA]
>SRA1013881
SRR023774.239797
Tampa Bay phage from induction experiment (SRP001112)
84
9
-
Asn
GTT
[SRA]
>SRA1013888
SRR023774.264876
Tampa Bay phage from induction experiment (SRP001112)
84
9
-
Asn
GTT
[SRA]
Identical group No.620458 (1 seq.)
>SRA1013868
SRR023774.184077
Tampa Bay phage from induction experiment (SRP001112)
7
82
+
Asn
GTT
[SRA]
Identical group No.756589 (1 seq.)
>SRA1013827
SRR023774.28528
Tampa Bay phage from induction experiment (SRP001112)
31
105
+
Asn
GTT
[SRA]
Identical group No.756592 (1 seq.)
>SRA1013846
SRR023774.87251
Tampa Bay phage from induction experiment (SRP001112)
15
87
+
Asn
GTT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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