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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tenericutes
Anticodon = ACG
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271059 (14 seq.)
>PL191001787
LR214986
Tenericutes
Mycoplasma cynos NCTC10142 plasmid:13 (LR214986)
559526
559450
-
Arg
ACG
[ENA]
¡û
>C191218092
LR214950
Mycoplasmatota
Mycoplasmopsis gallinacea NCTC10183 [LR214950]
683751
683675
-
Arg
ACG
-
¡û
>C191218367
LR215010
Mycoplasmatota
Mycoplasmopsis canis NCTC10146 [LR215010]
470237
470161
-
Arg
ACG
-
¡û
>C191224829
LS991951
Mycoplasmatota
Mycoplasmopsis edwardii NCTC10132 [LS991951]
380286
380210
-
Arg
ACG
-
¡û
>W141558755
JHWE01000012
Mycoplasmatota
Mycoplasma leonicaptivi ATCC 49890 [JHWE]
11760
11836
+
Arg
ACG
[ENA]
¡û
>C151075554
CP011021
Mycoplasmatota
Mycoplasmopsis gallinacea B2096 8B [CP011021]
608751
608675
-
Arg
ACG
[Ensembl]
¡û
>C151081647
CP011368
Mycoplasmatota
Mycoplasmopsis canis LV [CP011368]
194099
194023
-
Arg
ACG
[Ensembl]
¡û
>C151099853
HF559394
Mycoplasmatota
Mycoplasmopsis cynos C142 [HF559394]
535848
535772
-
Arg
ACG
[Ensembl]
¡û
>C161070559
CP014281
Mycoplasmatota
Mycoplasmopsis canis PG 14 [CP014281]
187835
187759
-
Arg
ACG
-
¡û
>W121060466
AJFQ01000005
Mycoplasmatota
Mycoplasmopsis canis PG 14 [AJFQ]
216070
216146
+
Arg
ACG
[ENA]
¡û
>W121060497
AJFR01000004
Mycoplasmatota
Mycoplasmopsis canis UF31 [AJFR]
215732
215808
+
Arg
ACG
[ENA]
¡û
>W121060528
AJFS01000004
Mycoplasmatota
Mycoplasmopsis canis UF33 [AJFS]
215738
215814
+
Arg
ACG
[ENA]
¡û
>W121060559
AJFT01000004
Mycoplasmatota
Mycoplasmopsis canis UFG1 [AJFT]
216177
216253
+
Arg
ACG
[ENA]
¡û
>W121060590
AJFU01000005
Mycoplasmatota
Mycoplasmopsis canis UFG4 [AJFU]
216019
216095
+
Arg
ACG
[ENA]
¡û
Identical group No.281389 (6 seq.)
>PL191001757
LR214964
Tenericutes
Mycoplasma fermentans NCTC10117 plasmid:10 (LR214964)
36502
36426
-
Arg
ACG
[ENA]
¡û
>PL191001818
LR215003
Tenericutes
Mycoplasma conjunctivae NCTC10147 plasmid:7 (LR215003)
549780
549704
-
Arg
ACG
[ENA]
¡û
>W1910002682
ATFH01000036
Mycoplasmatota
Mycoplasmopsis fermentans MF-I2 [ATFH]
14869
14793
-
Arg
ACG
[ENA]
¡û
>C09107660
AP009608
Mycoplasmatota
Mycoplasmopsis fermentans PG18 [AP009608]
583129
583205
+
Arg
ACG
[Ensembl]
¡û
>C11114245
CP001995
Mycoplasmatota
Mycoplasmopsis fermentans JER [CP001995]
807312
807236
-
Arg
ACG
[Ensembl]
¡û
>C11114280
CP002458
Mycoplasmatota
Mycoplasmopsis fermentans M64 [CP002458]
936038
935962
-
Arg
ACG
[Ensembl]
¡û
Identical group No.282289 (9 seq.)
>W131185080
ARTL01000012
Mycoplasmatota
Mesomycoplasma hyorhinis ATCC 17981 [ARTL]
27703
27779
+
Arg
ACG
[ENA]
¡û
>C171051534
CP016817
Mycoplasmatota
Mesomycoplasma hyorhinis MDBK-IPV [CP016817]
451073
450997
-
Arg
ACG
-
¡û
>PL191001741
LR214949
Tenericutes
Mycoplasma hyorhinis NCTC10121 plasmid:3 (LR214949)
454566
454490
-
Arg
ACG
[ENA]
¡û
>C191224782
LS991950
Mycoplasmatota
Mesomycoplasma hyorhinis NCTC10130 [LS991950]
295779
295855
+
Arg
ACG
-
¡û
>C141009346
CP006849
Mycoplasmatota
Mesomycoplasma hyorhinis DBS 1050 [CP006849]
451172
451096
-
Arg
ACG
[Ensembl]
¡û
>C10109438
CP002170
Mycoplasmatota
Mesomycoplasma hyorhinis HUB-1 [CP002170]
292797
292873
+
Arg
ACG
[Ensembl]
¡û
>C11114522
CP002669
Mycoplasmatota
Mesomycoplasma hyorhinis MCLD [CP002669]
183931
183855
-
Arg
ACG
[Ensembl]
¡û
>C121009173
CP003231
Mycoplasmatota
Mesomycoplasma hyorhinis GDL-1 [CP003231]
451189
451113
-
Arg
ACG
[Ensembl]
¡û
>C131009705
CP003914
Mycoplasmatota
Mesomycoplasma hyorhinis SK76 [CP003914]
293998
294074
+
Arg
ACG
[Ensembl]
¡û
Identical group No.307499 (10 seq.)
>PL191001848
LR215032
Tenericutes
Mycoplasma gallopavonis NCTC10186 plasmid:2 (LR215032)
11028
11104
+
Arg
ACG
[ENA]
¡û
>C191182989
CP040825
Mycoplasmatota
Mycoplasma nasistruthionis 2F1A [CP040825]
7058
7134
+
Arg
ACG
-
¡û
>C191218450
LR215024
Mycoplasmatota
Mycoplasmopsis glycophila NCTC10194 [LR215024]
769815
769891
+
Arg
ACG
-
¡û
>C191218639
LR215039
Mycoplasmatota
Mycoplasmopsis columboralis NCTC10179 [LR215039]
227418
227342
-
Arg
ACG
-
¡û
>W141561106
JHYE01000003
Mycoplasmatota
Mycoplasmopsis glycophila ATCC 35277 [JHYE]
37912
37988
+
Arg
ACG
[ENA]
¡û
>W141731294
JNIZ01000001
Mycoplasmatota
Mycoplasmopsis sturni DSM 22021 [JNIZ]
120936
121012
+
Arg
ACG
[ENA]
¡û
>W141732362
JNJZ01000007
Mycoplasmatota
Mycoplasmopsis columboralis ATCC 29258 [JNJZ]
5752
5676
-
Arg
ACG
[ENA]
¡û
>W141807427
JPOK01000004
Mycoplasmatota
Mycoplasma buteonis [JPOK]
80075
80151
+
Arg
ACG
[ENA]
¡û
>W1911768476
QXGN01000071
Mycoplasmatota
Mycoplasmopsis gallopavonis WR1 [QXGN]
346
422
+
Arg
ACG
[ENA]
¡û
>W1710601347
FUXF01000010
Mycoplasmatota
Mycoplasmopsis verecunda verecundum [FUXF]
16855
16931
+
Arg
ACG
[ENA]
¡û
Identical group No.324864 (10 seq.)
>WENV180809324
ODJK01011777
[ODJK] human metagenome; G_DNA_Subgingival plaque
2181
2105
-
Arg
ACG
[ENA]
¢þ
>WENV180892006
ODMQ01099165
[ODMQ] human metagenome; G_DNA_Supragingival plaque
7
83
+
Arg
ACG
[ENA]
¢þ
>WENV180950582
ODUH01000199
[ODUH] human metagenome; G_DNA_Subgingival plaque
17100
17024
-
Arg
ACG
[ENA]
¢þ
>WENV181078923
OEAS01001045
[OEAS] human metagenome; G_DNA_Supragingival plaque
16491
16567
+
Arg
ACG
[ENA]
¢þ
>WENV181091778
OEBC01089040
[OEBC] human metagenome; G_DNA_Supragingival plaque
142
66
-
Arg
ACG
[ENA]
¢þ
>WENV181178524
OEJT01000043
[OEJT] human metagenome; G_DNA_Supragingival plaque
26667
26743
+
Arg
ACG
[ENA]
¢þ
>W141170952
AXZE01000009
Mycoplasmatota
Metamycoplasma salivarium ATCC 23064 [AXZE]
14067
14143
+
Arg
ACG
[ENA]
¡û
>PL191001688
LR214939
Tenericutes
Mycoplasma salivarium NCTC10113 plasmid:2 (LR214939)
618481
618557
+
Arg
ACG
[ENA]
¡û
>C181188617
CP030140
Mycoplasmatota
[Mycoplasma] anseris ATCC 49234 [CP030140]
565216
565292
+
Arg
ACG
-
¡û
>W141732306
JNJX01000014
Mycoplasmatota
[Mycoplasma] anseris ATCC 49234 [JNJX]
10761
10837
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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