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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tenericutes
Anticodon = CAA
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.218241 (27 seq.)
>W1711799327
MWWN01000002
Mycoplasmatota
Mesomycoplasma hyopneumoniae [MWWN]
168734
168817
+
Leu
CAA
[ENA]
¡û
>W1711942853
NBBN01000082
Mycoplasmatota
Mesomycoplasma hyopneumoniae [NBBN]
10928
11011
+
Leu
CAA
[ENA]
¡û
>C013549
AE017332
Mycoplasmatota
Mesomycoplasma hyopneumoniae 232 [AE017332]
271495
271578
+
Leu
CAA
[Ensembl]
¡û
>C013625
AE017243
Mycoplasmatota
Mesomycoplasma hyopneumoniae J [AE017243]
170508
170425
-
Leu
CAA
[Ensembl]
¡û
>W141283046
JAKV01000001
Mycoplasmatota
Mesomycoplasma ovipneumoniae NM2010 [JAKV]
532970
532887
-
Leu
CAA
[ENA]
¡û
>W141450914
JFAD01000036
Mycoplasmatota
Mesomycoplasma ovipneumoniae 14811 [JFAD]
699
616
-
Leu
CAA
[ENA]
¡û
>PL191001792
LR214993
Tenericutes
Mycoplasma hyopneumoniae NCTC10127 plasmid:2 (LR214993)
178712
178795
+
Leu
CAA
[ENA]
¡û
>C181071535
CP022714
Mycoplasmatota
Mesomycoplasma hyopneumoniae KM014 [CP022714]
408642
408559
-
Leu
CAA
-
¡û
>C181096462
CP024161
Mycoplasmatota
Mesomycoplasma dispar GS01 [CP024161]
245486
245403
-
Leu
CAA
-
¡û
>C191161529
CP038641
Mycoplasmatota
Mesomycoplasma hyopneumoniae ES-2 [CP038641]
176100
176017
-
Leu
CAA
-
¡û
>C191218241
LR214971
Mycoplasmatota
Mesomycoplasma dispar NCTC10125 [LR214971]
251628
251545
-
Leu
CAA
-
¡û
>C191218484
LR215028
Mycoplasmatota
Mesomycoplasma ovipneumoniae NCTC10151 [LR215025, LR215028]
294345
294262
-
Leu
CAA
-
¡û
>W1910000240
AGRE01000019
Mycoplasmatota
Mesomycoplasma ovipneumoniae ATCC 29419 [AGRE]
14007
13924
-
Leu
CAA
[ENA]
¡û
>W1910000271
AJQV01000019
Mycoplasmatota
Mycoplasma mycoides subsp. capri str. G1201 [AJQV]
14007
13924
-
Leu
CAA
[ENA]
¡û
>W1910573327
JOTL01000045
Mycoplasmatota
Mesomycoplasma ovipneumoniae ATCC 29419 Y98 [JOTL]
360
277
-
Leu
CAA
[ENA]
¡û
>C151019171
CP007229
Mycoplasmatota
Mesomycoplasma dispar ATCC 27140 [CP007229]
251625
251542
-
Leu
CAA
[Ensembl]
¡û
>W1510472735
CQIE01000158
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 CH43 [CQIE]
1244
1161
-
Leu
CAA
[ENA]
¡û
>C11114466
CP002274
Mycoplasmatota
Mesomycoplasma hyopneumoniae 168 [CP002274]
185450
185533
+
Leu
CAA
[Ensembl]
¡û
>W11163125
AFHO01000008
Mycoplasmatota
Mesomycoplasma ovipneumoniae SC01 [AFHO]
78711
78628
-
Leu
CAA
[ENA]
¡û
>C131002139
CP003131
Mycoplasmatota
Mesomycoplasma hyopneumoniae 168-L [CP003131]
185407
185490
+
Leu
CAA
[Ensembl]
¡û
>W1710624978
JOTE01000007
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTE]
30643
30726
+
Leu
CAA
[ENA]
¡û
>W1710625029
JOTF01000026
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTF]
14115
14032
-
Leu
CAA
[ENA]
¡û
>W1710625055
JOTG01000047
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTG]
13794
13877
+
Leu
CAA
[ENA]
¡û
>W1710625089
JOTH01000038
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTH]
7224
7307
+
Leu
CAA
[ENA]
¡û
>W1710625114
JOTI01000049
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTI]
1792
1709
-
Leu
CAA
[ENA]
¡û
>W1710625148
JOTJ01000068
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTJ]
7438
7521
+
Leu
CAA
[ENA]
¡û
>W1710625172
JOTK01000066
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTK]
182
99
-
Leu
CAA
[ENA]
¡û
Identical group No.218463 (7 seq.)
>PL191001844
LR215005
Tenericutes
Mycoplasma conjunctivae NCTC10147 plasmid:9 (LR215005)
79835
79752
-
Leu
CAA
[ENA]
¡û
>C191218147
LR214955
Mycoplasmatota
Mycoplasmopsis fermentans NCTC10117 [LR214955, LR214962]
319110
319027
-
Leu
CAA
-
¡û
>W1910002625
ATFG01000005
Mycoplasmatota
Mycoplasmopsis fermentans MF-I1 [ATFG]
23793
23710
-
Leu
CAA
[ENA]
¡û
>W1910002660
ATFH01000006
Mycoplasmatota
Mycoplasmopsis fermentans MF-I2 [ATFH]
23793
23710
-
Leu
CAA
[ENA]
¡û
>C09107673
AP009608
Mycoplasmatota
Mycoplasmopsis fermentans PG18 [AP009608]
232353
232270
-
Leu
CAA
[Ensembl]
¡û
>C11114259
CP001995
Mycoplasmatota
Mycoplasmopsis fermentans JER [CP001995]
159946
159863
-
Leu
CAA
[Ensembl]
¡û
>C11114294
CP002458
Mycoplasmatota
Mycoplasmopsis fermentans M64 [CP002458]
176376
176293
-
Leu
CAA
[Ensembl]
¡û
Identical group No.218526 (9 seq.)
>W131185106
ARTL01000025
Mycoplasmatota
Mesomycoplasma hyorhinis ATCC 17981 [ARTL]
66784
66701
-
Leu
CAA
[ENA]
¡û
>C171051535
CP016817
Mycoplasmatota
Mesomycoplasma hyorhinis MDBK-IPV [CP016817]
376532
376449
-
Leu
CAA
-
¡û
>PL191001742
LR214949
Tenericutes
Mycoplasma hyorhinis NCTC10121 plasmid:3 (LR214949)
380021
379938
-
Leu
CAA
[ENA]
¡û
>C191224783
LS991950
Mycoplasmatota
Mesomycoplasma hyorhinis NCTC10130 [LS991950]
370345
370428
+
Leu
CAA
-
¡û
>C141009347
CP006849
Mycoplasmatota
Mesomycoplasma hyorhinis DBS 1050 [CP006849]
376634
376551
-
Leu
CAA
[Ensembl]
¡û
>C10109439
CP002170
Mycoplasmatota
Mesomycoplasma hyorhinis HUB-1 [CP002170]
367377
367460
+
Leu
CAA
[Ensembl]
¡û
>C11114523
CP002669
Mycoplasmatota
Mesomycoplasma hyorhinis MCLD [CP002669]
109384
109301
-
Leu
CAA
[Ensembl]
¡û
>C121009174
CP003231
Mycoplasmatota
Mesomycoplasma hyorhinis GDL-1 [CP003231]
376651
376568
-
Leu
CAA
[Ensembl]
¡û
>C131009706
CP003914
Mycoplasmatota
Mesomycoplasma hyorhinis SK76 [CP003914]
368565
368648
+
Leu
CAA
[Ensembl]
¡û
Identical group No.219603 (7 seq.)
>WENV180709521
ODFJ01114512
[ODFJ] human metagenome; G_DNA_Tongue dorsum
239
156
-
Leu
CAA
[ENA]
¢þ
>WENV180900591
ODOJ01003623
[ODOJ] human metagenome; G_DNA_Tongue dorsum
2457
2540
+
Leu
CAA
[ENA]
¢þ
>PL191001712
LR214941
Tenericutes
Mycoplasma orale NCTC10112 plasmid:2 (LR214941)
11302
11385
+
Leu
CAA
[ENA]
¡û
>C191218021
LR214940
Mycoplasmatota
Metamycoplasma orale NCTC10112 [LR214940]
732374
732457
+
Leu
CAA
-
¡û
>W09101358
AAEJ01000016
Alphaproteobacteria
Ehrlichia canis str. Jake [AAEJ]
1034
1117
+
Leu
CAA
[ENA]
¡û
>W1910236641
FPIG01000012
Chlamydiota
Chlamydia abortus AB7 [FPIG]
13151
13068
-
Leu
CAA
[ENA]
¡û
>W1910281366
FQTM01000343
Chlamydiota
Chlamydia abortus 162STDY5437294 [FQTM]
434
517
+
Leu
CAA
[ENA]
¡û
Identical group No.220098 (5 seq.)
>WENV180735392
ODGZ01194635
[ODGZ] human metagenome; G_DNA_Supragingival plaque
24
107
+
Leu
CAA
[ENA]
¢þ
>WENV181077074
OEAP01024090
[OEAP] human metagenome; G_DNA_Supragingival plaque
685
768
+
Leu
CAA
[ENA]
¢þ
>WENV181178574
OEJT01000066
[OEJT] human metagenome; G_DNA_Supragingival plaque
43422
43339
-
Leu
CAA
[ENA]
¢þ
>W141170981
AXZE01000012
Mycoplasmatota
Metamycoplasma salivarium ATCC 23064 [AXZE]
43353
43270
-
Leu
CAA
[ENA]
¡û
>PL191001694
LR214939
Tenericutes
Mycoplasma salivarium NCTC10113 plasmid:2 (LR214939)
379837
379754
-
Leu
CAA
[ENA]
¡û
Identical group No.220537 (2 seq.)
>PL191001854
LR215032
Tenericutes
Mycoplasma gallopavonis NCTC10186 plasmid:2 (LR215032)
351756
351673
-
Leu
CAA
[ENA]
¡û
>W1911768446
QXGN01000001
Mycoplasmatota
Mycoplasmopsis gallopavonis WR1 [QXGN]
31809
31892
+
Leu
CAA
[ENA]
¡û
Identical group No.221658 (2 seq.)
>PL191001770
LR214986
Tenericutes
Mycoplasma cynos NCTC10142 plasmid:13 (LR214986)
302040
302123
+
Leu
CAA
[ENA]
¡û
>C151099836
HF559394
Mycoplasmatota
Mycoplasmopsis cynos C142 [HF559394]
299333
299416
+
Leu
CAA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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