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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tenericutes
Anticodon = CCA
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.780827 (24 seq.)
>W1711799340
MWWN01000002
Mycoplasmatota
Mesomycoplasma hyopneumoniae [MWWN]
219619
219546
-
Trp
CCA
[ENA]
¡û
>W1711942854
NBBN01000114
Mycoplasmatota
Mesomycoplasma hyopneumoniae [NBBN]
9833
9906
+
Trp
CCA
[ENA]
¡û
>C013572
AE017332
Mycoplasmatota
Mesomycoplasma hyopneumoniae 232 [AE017332]
322312
322239
-
Trp
CCA
[Ensembl]
¡û
>C013578
AE017244
Mycoplasmatota
Mesomycoplasma hyopneumoniae 7448 [AE017244]
125050
125123
+
Trp
CCA
[Ensembl]
¡û
>C013608
AE017243
Mycoplasmatota
Mesomycoplasma hyopneumoniae J [AE017243]
119748
119821
+
Trp
CCA
[Ensembl]
¡û
>W141283034
JAKV01000001
Mycoplasmatota
Mesomycoplasma ovipneumoniae NM2010 [JAKV]
299970
300043
+
Trp
CCA
[ENA]
¡û
>W141450899
JFAD01000026
Mycoplasmatota
Mesomycoplasma ovipneumoniae 14811 [JFAD]
24368
24441
+
Trp
CCA
[ENA]
¡û
>PL191001805
LR214993
Tenericutes
Mycoplasma hyopneumoniae NCTC10127 plasmid:2 (LR214993)
229536
229463
-
Trp
CCA
[ENA]
¡û
>C191218466
LR215028
Mycoplasmatota
Mesomycoplasma ovipneumoniae NCTC10151 [LR215025, LR215028]
44555
44628
+
Trp
CCA
-
¡û
>W1910000263
AGRE01000087
Mycoplasmatota
Mesomycoplasma ovipneumoniae ATCC 29419 [AGRE]
8984
8911
-
Trp
CCA
[ENA]
¡û
>W1910000294
AJQV01000087
Mycoplasmatota
Mycoplasma mycoides subsp. capri str. G1201 [AJQV]
8984
8911
-
Trp
CCA
[ENA]
¡û
>W1910573335
JOTL01000086
Mycoplasmatota
Mesomycoplasma ovipneumoniae ATCC 29419 Y98 [JOTL]
8986
8913
-
Trp
CCA
[ENA]
¡û
>W1510472748
CQIE01000327
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 CH43 [CQIE]
782
709
-
Trp
CCA
[ENA]
¡û
>C11114464
CP002274
Mycoplasmatota
Mesomycoplasma hyopneumoniae 168 [CP002274]
119662
119735
+
Trp
CCA
[Ensembl]
¡û
>W11163130
AFHO01000012
Mycoplasmatota
Mesomycoplasma ovipneumoniae SC01 [AFHO]
4342
4415
+
Trp
CCA
[ENA]
¡û
>C131002137
CP003131
Mycoplasmatota
Mesomycoplasma hyopneumoniae 168-L [CP003131]
119616
119689
+
Trp
CCA
[Ensembl]
¡û
>C131007153
CP003802
Mycoplasmatota
Mesomycoplasma hyopneumoniae 7422 [CP003802]
123161
123234
+
Trp
CCA
[Ensembl]
¡û
>W1710624974
JOTE01000001
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTE]
37306
37233
-
Trp
CCA
[ENA]
¡û
>W1710625004
JOTF01000001
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTF]
63574
63647
+
Trp
CCA
[ENA]
¡û
>W1710625033
JOTG01000001
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTG]
13608
13535
-
Trp
CCA
[ENA]
¡û
>W1710625064
JOTH01000003
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTH]
8893
8820
-
Trp
CCA
[ENA]
¡û
>W1710625118
JOTI01000069
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTI]
4383
4456
+
Trp
CCA
[ENA]
¡û
>W1710625149
JOTJ01000069
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTJ]
4311
4384
+
Trp
CCA
[ENA]
¡û
>W1710625154
JOTK01000021
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTK]
2341
2414
+
Trp
CCA
[ENA]
¡û
Identical group No.782169 (7 seq.)
>PL191001755
LR214963
Tenericutes
Mycoplasma fermentans NCTC10117 plasmid:9 (LR214963)
209211
209138
-
Trp
CCA
[ENA]
¡û
>PL191001816
LR215003
Tenericutes
Mycoplasma conjunctivae NCTC10147 plasmid:7 (LR215003)
298007
298080
+
Trp
CCA
[ENA]
¡û
>W1910002632
ATFG01000030
Mycoplasmatota
Mycoplasmopsis fermentans MF-I1 [ATFG]
132283
132356
+
Trp
CCA
[ENA]
¡û
>W1910002667
ATFH01000026
Mycoplasmatota
Mycoplasmopsis fermentans MF-I2 [ATFH]
72449
72522
+
Trp
CCA
[ENA]
¡û
>C09107651
AP009608
Mycoplasmatota
Mycoplasmopsis fermentans PG18 [AP009608]
65579
65652
+
Trp
CCA
[Ensembl]
¡û
>C11114239
CP001995
Mycoplasmatota
Mycoplasmopsis fermentans JER [CP001995]
608048
608121
+
Trp
CCA
[Ensembl]
¡û
>C11114274
CP002458
Mycoplasmatota
Mycoplasmopsis fermentans M64 [CP002458]
684851
684924
+
Trp
CCA
[Ensembl]
¡û
Identical group No.782379 (9 seq.)
>W131185102
ARTL01000024
Mycoplasmatota
Mesomycoplasma hyorhinis ATCC 17981 [ARTL]
45774
45847
+
Trp
CCA
[ENA]
¡û
>C171051521
CP016817
Mycoplasmatota
Mesomycoplasma hyorhinis MDBK-IPV [CP016817]
639090
639017
-
Trp
CCA
-
¡û
>PL191001728
LR214949
Tenericutes
Mycoplasma hyorhinis NCTC10121 plasmid:3 (LR214949)
645311
645238
-
Trp
CCA
[ENA]
¡û
>C191224794
LS991950
Mycoplasmatota
Mesomycoplasma hyorhinis NCTC10130 [LS991950]
640327
640254
-
Trp
CCA
-
¡û
>C141009333
CP006849
Mycoplasmatota
Mesomycoplasma hyorhinis DBS 1050 [CP006849]
639177
639104
-
Trp
CCA
[Ensembl]
¡û
>C10109450
CP002170
Mycoplasmatota
Mesomycoplasma hyorhinis HUB-1 [CP002170]
641133
641060
-
Trp
CCA
[Ensembl]
¡û
>C11114504
CP002669
Mycoplasmatota
Mesomycoplasma hyorhinis MCLD [CP002669]
673585
673658
+
Trp
CCA
[Ensembl]
¡û
>C121009160
CP003231
Mycoplasmatota
Mesomycoplasma hyorhinis GDL-1 [CP003231]
639194
639121
-
Trp
CCA
[Ensembl]
¡û
>C131009717
CP003914
Mycoplasmatota
Mesomycoplasma hyorhinis SK76 [CP003914]
640038
639965
-
Trp
CCA
[Ensembl]
¡û
Identical group No.796653 (5 seq.)
>WENV180810127
ODJK01121625
[ODJK] human metagenome; G_DNA_Subgingival plaque
234
161
-
Trp
CCA
[ENA]
¢þ
>WENV180951115
ODUH01008755
[ODUH] human metagenome; G_DNA_Subgingival plaque
2722
2649
-
Trp
CCA
[ENA]
¢þ
>WENV181178751
OEJT01000208
[OEJT] human metagenome; G_DNA_Supragingival plaque
49648
49575
-
Trp
CCA
[ENA]
¢þ
>W141170953
AXZE01000009
Mycoplasmatota
Metamycoplasma salivarium ATCC 23064 [AXZE]
112794
112867
+
Trp
CCA
[ENA]
¡û
>PL191001689
LR214939
Tenericutes
Mycoplasma salivarium NCTC10113 plasmid:2 (LR214939)
717208
717281
+
Trp
CCA
[ENA]
¡û
Identical group No.799185 (2 seq.)
>PL191001774
LR214986
Tenericutes
Mycoplasma cynos NCTC10142 plasmid:13 (LR214986)
772982
773055
+
Trp
CCA
[ENA]
¡û
>C151099840
HF559394
Mycoplasmatota
Mycoplasmopsis cynos C142 [HF559394]
777788
777861
+
Trp
CCA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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