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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tenericutes
Anticodon = CCT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.242096 (6 seq.)
>PL191001813
LR215003
Tenericutes
Mycoplasma conjunctivae NCTC10147 plasmid:7 (LR215003)
81534
81611
+
Arg
CCT
[ENA]
¡û
>C191218150
LR214955
Mycoplasmatota
Mycoplasmopsis fermentans NCTC10117 [LR214955, LR214962]
164494
164417
-
Arg
CCT
-
¡û
>W1910002621
ATFG01000001
Mycoplasmatota
Mycoplasmopsis fermentans MF-I1 [ATFG]
10029
9952
-
Arg
CCT
[ENA]
¡û
>W1910002656
ATFH01000003
Mycoplasmatota
Mycoplasmopsis fermentans MF-I2 [ATFH]
2821
2744
-
Arg
CCT
[ENA]
¡û
>C09107664
AP009608
Mycoplasmatota
Mycoplasmopsis fermentans PG18 [AP009608]
741048
741125
+
Arg
CCT
[Ensembl]
¡û
>C11114297
CP002458
Mycoplasmatota
Mycoplasmopsis fermentans M64 [CP002458]
21981
21904
-
Arg
CCT
[Ensembl]
¡û
Identical group No.495387 (7 seq.)
>WENV180735203
ODGZ01091808
[ODGZ] human metagenome; G_DNA_Supragingival plaque
91
16
-
Arg
CCT
[ENA]
¢þ
>WENV180950677
ODUH01000707
[ODUH] human metagenome; G_DNA_Subgingival plaque
3512
3587
+
Arg
CCT
[ENA]
¢þ
>WENV181067859
ODZI01062670
[ODZI] human metagenome; G_DNA_Supragingival plaque
152
77
-
Arg
CCT
[ENA]
¢þ
>WENV181077679
OEAP01105785
[OEAP] human metagenome; G_DNA_Supragingival plaque
340
415
+
Arg
CCT
[ENA]
¢þ
>WENV181178769
OEJT01000233
[OEJT] human metagenome; G_DNA_Supragingival plaque
16717
16792
+
Arg
CCT
[ENA]
¢þ
>W141170978
AXZE01000010
Mycoplasmatota
Metamycoplasma salivarium ATCC 23064 [AXZE]
31851
31776
-
Arg
CCT
[ENA]
¡û
>PL191001684
LR214939
Tenericutes
Mycoplasma salivarium NCTC10113 plasmid:2 (LR214939)
286352
286427
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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