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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tenericutes
Anticodon = CGA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.35356 (4 seq.)
>WENV180950918
ODUH01004018
[ODUH] human metagenome; G_DNA_Subgingival plaque
4408
4498
+
Ser
CGA
[ENA]
¢þ
>WENV181178752
OEJT01000208
[OEJT] human metagenome; G_DNA_Supragingival plaque
39296
39206
-
Ser
CGA
[ENA]
¢þ
>W141170954
AXZE01000009
Mycoplasmatota
Metamycoplasma salivarium ATCC 23064 [AXZE]
123146
123236
+
Ser
CGA
[ENA]
¡û
>PL191001690
LR214939
Tenericutes
Mycoplasma salivarium NCTC10113 plasmid:2 (LR214939)
727560
727650
+
Ser
CGA
[ENA]
¡û
Identical group No.47128 (7 seq.)
>PL191001815
LR215003
Tenericutes
Mycoplasma conjunctivae NCTC10147 plasmid:7 (LR215003)
164963
165052
+
Ser
CGA
[ENA]
¡û
>C191218152
LR214955
Mycoplasmatota
Mycoplasmopsis fermentans NCTC10117 [LR214955, LR214962]
81065
80976
-
Ser
CGA
-
¡û
>W1910002650
ATFG01000044
Mycoplasmatota
Mycoplasmopsis fermentans MF-I1 [ATFG]
45561
45472
-
Ser
CGA
[ENA]
¡û
>W1910002685
ATFH01000040
Mycoplasmatota
Mycoplasmopsis fermentans MF-I2 [ATFH]
30530
30441
-
Ser
CGA
[ENA]
¡û
>C09107666
AP009608
Mycoplasmatota
Mycoplasmopsis fermentans PG18 [AP009608]
824477
824566
+
Ser
CGA
[Ensembl]
¡û
>C11114243
CP001995
Mycoplasmatota
Mycoplasmopsis fermentans JER [CP001995]
915871
915782
-
Ser
CGA
[Ensembl]
¡û
>C11114278
CP002458
Mycoplasmatota
Mycoplasmopsis fermentans M64 [CP002458]
1057303
1057214
-
Ser
CGA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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