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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tenericutes
Anticodon = CGT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.554415 (2 seq.)
>W141170969
AXZE01000009
Mycoplasmatota
Metamycoplasma salivarium ATCC 23064 [AXZE]
227340
227265
-
Thr
CGT
[ENA]
¡û
>PL191001711
LR214939
Tenericutes
Mycoplasma salivarium NCTC10113 plasmid:2 (LR214939)
103407
103332
-
Thr
CGT
[ENA]
¡û
Identical group No.782126 (6 seq.)
>PL191001833
LR215003
Tenericutes
Mycoplasma conjunctivae NCTC10147 plasmid:7 (LR215003)
91743
91670
-
Thr
CGT
[ENA]
¡û
>C191218136
LR214955
Mycoplasmatota
Mycoplasmopsis fermentans NCTC10117 [LR214955, LR214962]
154285
154358
+
Thr
CGT
-
¡û
>W1910002651
ATFG01000047
Mycoplasmatota
Mycoplasmopsis fermentans MF-I1 [ATFG]
37356
37429
+
Thr
CGT
[ENA]
¡û
>C09107669
AP009608
Mycoplasmatota
Mycoplasmopsis fermentans PG18 [AP009608]
751257
751184
-
Thr
CGT
[Ensembl]
¡û
>C11114228
CP001995
Mycoplasmatota
Mycoplasmopsis fermentans JER [CP001995]
11831
11904
+
Thr
CGT
[Ensembl]
¡û
>C11114263
CP002458
Mycoplasmatota
Mycoplasmopsis fermentans M64 [CP002458]
11772
11845
+
Thr
CGT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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