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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tenericutes
Anticodon = GAG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182181 (9 seq.)
>W131185093
ARTL01000018
Mycoplasmatota
Mesomycoplasma hyorhinis ATCC 17981 [ARTL]
8575
8659
+
Leu
GAG
[ENA]
¡û
>C171051508
CP016817
Mycoplasmatota
Mesomycoplasma hyorhinis MDBK-IPV [CP016817]
180335
180419
+
Leu
GAG
-
¡û
>PL191001715
LR214949
Tenericutes
Mycoplasma hyorhinis NCTC10121 plasmid:3 (LR214949)
180103
180187
+
Leu
GAG
[ENA]
¡û
>C191224780
LS991950
Mycoplasmatota
Mesomycoplasma hyorhinis NCTC10130 [LS991950]
180089
180173
+
Leu
GAG
-
¡û
>C141009320
CP006849
Mycoplasmatota
Mesomycoplasma hyorhinis DBS 1050 [CP006849]
180291
180375
+
Leu
GAG
[Ensembl]
¡û
>C10109436
CP002170
Mycoplasmatota
Mesomycoplasma hyorhinis HUB-1 [CP002170]
179928
180012
+
Leu
GAG
[Ensembl]
¡û
>C11114520
CP002669
Mycoplasmatota
Mesomycoplasma hyorhinis MCLD [CP002669]
295039
294955
-
Leu
GAG
[Ensembl]
¡û
>C121009147
CP003231
Mycoplasmatota
Mesomycoplasma hyorhinis GDL-1 [CP003231]
180291
180375
+
Leu
GAG
[Ensembl]
¡û
>C131009703
CP003914
Mycoplasmatota
Mesomycoplasma hyorhinis SK76 [CP003914]
180140
180224
+
Leu
GAG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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