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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tenericutes
Anticodon = GCC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.782170 (7 seq.)
>PL191001832
LR215003
Tenericutes
Mycoplasma conjunctivae NCTC10147 plasmid:7 (LR215003)
191739
191666
-
Gly
GCC
[ENA]
¡û
>C191218135
LR214955
Mycoplasmatota
Mycoplasmopsis fermentans NCTC10117 [LR214955, LR214962]
54289
54362
+
Gly
GCC
-
¡û
>W1910002649
ATFG01000044
Mycoplasmatota
Mycoplasmopsis fermentans MF-I1 [ATFG]
18786
18859
+
Gly
GCC
[ENA]
¡û
>W1910002684
ATFH01000040
Mycoplasmatota
Mycoplasmopsis fermentans MF-I2 [ATFH]
3756
3829
+
Gly
GCC
[ENA]
¡û
>C09107668
AP009608
Mycoplasmatota
Mycoplasmopsis fermentans PG18 [AP009608]
851253
851180
-
Gly
GCC
[Ensembl]
¡û
>C11114241
CP001995
Mycoplasmatota
Mycoplasmopsis fermentans JER [CP001995]
889095
889168
+
Gly
GCC
[Ensembl]
¡û
>C11114276
CP002458
Mycoplasmatota
Mycoplasmopsis fermentans M64 [CP002458]
1030527
1030600
+
Gly
GCC
[Ensembl]
¡û
Identical group No.796630 (17 seq.)
>WENV180241143
OBDF01040970
[OBDF] human oral metagenome; human oral
158
85
-
Gly
GCC
[ENA]
¢þ
>WENV180809370
ODJK01014042
[ODJK] human metagenome; G_DNA_Subgingival plaque
1651
1578
-
Gly
GCC
[ENA]
¢þ
>WENV180951815
ODUH01059067
[ODUH] human metagenome; G_DNA_Subgingival plaque
630
703
+
Gly
GCC
[ENA]
¢þ
>WENV181077592
OEAP01083030
[OEAP] human metagenome; G_DNA_Supragingival plaque
47
120
+
Gly
GCC
[ENA]
¢þ
>WENV181080231
OEAS01033851
[OEAS] human metagenome; G_DNA_Supragingival plaque
198
271
+
Gly
GCC
[ENA]
¢þ
>WENV181092036
OEBC01196493
[OEBC] human metagenome; G_DNA_Supragingival plaque
175
248
+
Gly
GCC
[ENA]
¢þ
>WENV181178527
OEJT01000043
[OEJT] human metagenome; G_DNA_Supragingival plaque
72901
72828
-
Gly
GCC
[ENA]
¢þ
>W141170972
AXZE01000009
Mycoplasmatota
Metamycoplasma salivarium ATCC 23064 [AXZE]
60273
60200
-
Gly
GCC
[ENA]
¡û
>W141464147
JFKG01000017
Mycoplasmatota
Metamycoplasma hyosynoviae [JFKG]
21114
21187
+
Gly
GCC
[ENA]
¡û
>W141464178
JFKH01000022
Mycoplasmatota
Metamycoplasma hyosynoviae [JFKH]
39089
39162
+
Gly
GCC
[ENA]
¡û
>W141464228
JFKI01000044
Mycoplasmatota
Metamycoplasma hyosynoviae [JFKI]
7115
7042
-
Gly
GCC
[ENA]
¡û
>W141464236
JFKJ01000025
Mycoplasmatota
Metamycoplasma hyosynoviae [JFKJ]
27334
27261
-
Gly
GCC
[ENA]
¡û
>W141464271
JFKK01000004
Mycoplasmatota
Metamycoplasma hyosynoviae [JFKK]
1760
1833
+
Gly
GCC
[ENA]
¡û
>W141464314
JFKL01000040
Mycoplasmatota
Metamycoplasma hyosynoviae [JFKL]
6624
6697
+
Gly
GCC
[ENA]
¡û
>W141464344
JFKM01000006
Mycoplasmatota
Metamycoplasma hyosynoviae [JFKM]
7201
7128
-
Gly
GCC
[ENA]
¡û
>PL191001693
LR214939
Tenericutes
Mycoplasma salivarium NCTC10113 plasmid:2 (LR214939)
664687
664614
-
Gly
GCC
[ENA]
¡û
>C191008273
CP008748
Mycoplasmatota
Metamycoplasma hyosynoviae M60 [CP008748]
580490
580417
-
Gly
GCC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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