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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tenericutes
Anticodon = GCT
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.13919 (8 seq.)
>WENV180734979
ODGZ01042180
[ODGZ] human metagenome; G_DNA_Supragingival plaque
752
842
+
Ser
GCT
[ENA]
¢þ
>WENV180788515
ODIS01071338
[ODIS] human metagenome; G_DNA_Supragingival plaque
131
39
-
Ser
GCT
[ENA]
¢þ
>WENV180808773
ODJK01001018
[ODJK] human metagenome; G_DNA_Subgingival plaque
1374
1466
+
Ser
GCT
[ENA]
¢þ
>WENV180950586
ODUH01000201
[ODUH] human metagenome; G_DNA_Subgingival plaque
23372
23280
-
Ser
GCT
[ENA]
¢þ
>WENV181081415
OEAS01203508
[OEAS] human metagenome; G_DNA_Supragingival plaque
238
146
-
Ser
GCT
[ENA]
¢þ
>WENV181092195
OEBC01323134
[OEBC] human metagenome; G_DNA_Supragingival plaque
114
22
-
Ser
GCT
[ENA]
¢þ
>W141170982
AXZE01000012
Mycoplasmatota
Metamycoplasma salivarium ATCC 23064 [AXZE]
39532
39440
-
Ser
GCT
[ENA]
¡û
>PL191001695
LR214939
Tenericutes
Mycoplasma salivarium NCTC10113 plasmid:2 (LR214939)
376016
375924
-
Ser
GCT
[ENA]
¡û
Identical group No.20334 (7 seq.)
>PL191001754
LR214963
Tenericutes
Mycoplasma fermentans NCTC10117 plasmid:9 (LR214963)
205157
205248
+
Ser
GCT
[ENA]
¡û
>PL191001830
LR215003
Tenericutes
Mycoplasma conjunctivae NCTC10147 plasmid:7 (LR215003)
302061
301970
-
Ser
GCT
[ENA]
¡û
>W1910002642
ATFG01000030
Mycoplasmatota
Mycoplasmopsis fermentans MF-I1 [ATFG]
136338
136247
-
Ser
GCT
[ENA]
¡û
>W1910002677
ATFH01000026
Mycoplasmatota
Mycoplasmopsis fermentans MF-I2 [ATFH]
76503
76412
-
Ser
GCT
[ENA]
¡û
>C09107685
AP009608
Mycoplasmatota
Mycoplasmopsis fermentans PG18 [AP009608]
69633
69542
-
Ser
GCT
[Ensembl]
¡û
>C11114257
CP001995
Mycoplasmatota
Mycoplasmopsis fermentans JER [CP001995]
612104
612013
-
Ser
GCT
[Ensembl]
¡û
>C11114292
CP002458
Mycoplasmatota
Mycoplasmopsis fermentans M64 [CP002458]
688905
688814
-
Ser
GCT
[Ensembl]
¡û
Identical group No.30333 (36 seq.)
>W1711149211
LVLH01000027
Mycoplasmatota
Mycoplasmopsis gallinarum [LVLH]
13865
13955
+
Ser
GCT
[ENA]
¡û
>W141280437
JAHB01000007
Mycoplasmatota
Mycoplasmopsis cricetuli ATCC 35279 [JAHB]
6036
5946
-
Ser
GCT
[ENA]
¡û
>PL191001773
LR214986
Tenericutes
Mycoplasma cynos NCTC10142 plasmid:13 (LR214986)
616112
616202
+
Ser
GCT
[ENA]
¡û
>PL191001849
LR215032
Tenericutes
Mycoplasma gallopavonis NCTC10186 plasmid:2 (LR215032)
161270
161360
+
Ser
GCT
[ENA]
¡û
>C181093514
CP024049
Mycoplasmatota
Mycoplasmopsis bovirhinis GS01 [CP024049]
414671
414581
-
Ser
GCT
-
¡û
>C181188638
CP030141
Mycoplasmatota
Mycoplasmopsis anatis NCTC 10156 [CP030141]
334225
334315
+
Ser
GCT
-
¡û
>C191001026
AP018135
Mycoplasmatota
Mycoplasmopsis bovirhinis HAZ141_2 [AP018135]
659636
659546
-
Ser
GCT
-
¡û
>C191218104
LR214950
Mycoplasmatota
Mycoplasmopsis gallinacea NCTC10183 [LR214950]
36372
36282
-
Ser
GCT
-
¡û
>C191218242
LR214972
Mycoplasmatota
Mycoplasmopsis bovirhinis NCTC10118 [LR214972]
115889
115979
+
Ser
GCT
-
¡û
>C191218368
LR215010
Mycoplasmatota
Mycoplasmopsis canis NCTC10146 [LR215010]
358846
358756
-
Ser
GCT
-
¡û
>C191218447
LR215024
Mycoplasmatota
Mycoplasmopsis glycophila NCTC10194 [LR215024]
464798
464888
+
Ser
GCT
-
¡û
>C191218539
LR215035
Mycoplasmatota
Mycoplasmopsis anatis NCTC10156 [LR215035]
250682
250592
-
Ser
GCT
-
¡û
>C191218555
LR215036
Mycoplasmatota
Mycoplasmopsis citelli NCTC10181 [LR215036]
940977
941067
+
Ser
GCT
-
¡û
>C191218612
LR215039
Mycoplasmatota
Mycoplasmopsis columboralis NCTC10179 [LR215039]
269552
269642
+
Ser
GCT
-
¡û
>C191218652
LR215041
Mycoplasmatota
Mycoplasmopsis columbina NCTC10178 [LR215041]
294594
294684
+
Ser
GCT
-
¡û
>C191224824
LS991951
Mycoplasmatota
Mycoplasmopsis edwardii NCTC10132 [LS991951]
499932
500022
+
Ser
GCT
-
¡û
>W141558748
JHWE01000003
Mycoplasmatota
Mycoplasma leonicaptivi ATCC 49890 [JHWE]
20568
20478
-
Ser
GCT
[ENA]
¡û
>W141561107
JHYE01000004
Mycoplasmatota
Mycoplasmopsis glycophila ATCC 35277 [JHYE]
19619
19709
+
Ser
GCT
[ENA]
¡û
>W141562417
JHZE01000005
Mycoplasmatota
Mycoplasmopsis gallinarum DSM 19816 [JHZE]
162582
162672
+
Ser
GCT
[ENA]
¡û
>W141731299
JNIZ01000002
Mycoplasmatota
Mycoplasmopsis sturni DSM 22021 [JNIZ]
235497
235407
-
Ser
GCT
[ENA]
¡û
>W141732359
JNJZ01000007
Mycoplasmatota
Mycoplasmopsis columboralis ATCC 29258 [JNJZ]
47886
47976
+
Ser
GCT
[ENA]
¡û
>W141779604
JONY01000006
Mycoplasmatota
Mycoplasmopsis columbina ATCC 29257 [JONY]
5487
5577
+
Ser
GCT
[ENA]
¡û
>W141807453
JPOK01000009
Mycoplasmatota
Mycoplasma buteonis [JPOK]
65527
65617
+
Ser
GCT
[ENA]
¡û
>W1911768474
QXGN01000046
Mycoplasmatota
Mycoplasmopsis gallopavonis WR1 [QXGN]
5256
5346
+
Ser
GCT
[ENA]
¡û
>C151075541
CP011021
Mycoplasmatota
Mycoplasmopsis gallinacea B2096 8B [CP011021]
127083
127173
+
Ser
GCT
[Ensembl]
¡û
>C151081648
CP011368
Mycoplasmatota
Mycoplasmopsis canis LV [CP011368]
84596
84506
-
Ser
GCT
[Ensembl]
¡û
>C151099839
HF559394
Mycoplasmatota
Mycoplasmopsis cynos C142 [HF559394]
577722
577812
+
Ser
GCT
[Ensembl]
¡û
>W11174722
AFVJ01000007
Mycoplasmatota
Mycoplasmopsis anatis 1340 [AFVJ]
38111
38021
-
Ser
GCT
[ENA]
¡û
>W11176389
AFXA01000004
Mycoplasmatota
Mycoplasmopsis columbina SF7 [AFXA]
5070
5160
+
Ser
GCT
[ENA]
¡û
>C161070560
CP014281
Mycoplasmatota
Mycoplasmopsis canis PG 14 [CP014281]
76445
76355
-
Ser
GCT
-
¡û
>W121060467
AJFQ01000005
Mycoplasmatota
Mycoplasmopsis canis PG 14 [AJFQ]
318692
318782
+
Ser
GCT
[ENA]
¡û
>W121060498
AJFR01000004
Mycoplasmatota
Mycoplasmopsis canis UF31 [AJFR]
319244
319334
+
Ser
GCT
[ENA]
¡û
>W121060529
AJFS01000004
Mycoplasmatota
Mycoplasmopsis canis UF33 [AJFS]
319491
319581
+
Ser
GCT
[ENA]
¡û
>W121060560
AJFT01000004
Mycoplasmatota
Mycoplasmopsis canis UFG1 [AJFT]
319603
319693
+
Ser
GCT
[ENA]
¡û
>W121060591
AJFU01000005
Mycoplasmatota
Mycoplasmopsis canis UFG4 [AJFU]
317976
318066
+
Ser
GCT
[ENA]
¡û
>W1610959751
LVLH01000027
Mycoplasmatota
Mycoplasmopsis gallinarum [LVLH]
13865
13955
+
Ser
GCT
[ENA]
¡û
Identical group No.36217 (8 seq.)
>C171051532
CP016817
Mycoplasmatota
Mesomycoplasma hyorhinis MDBK-IPV [CP016817]
515168
515078
-
Ser
GCT
-
¡û
>PL191001739
LR214949
Tenericutes
Mycoplasma hyorhinis NCTC10121 plasmid:3 (LR214949)
518660
518570
-
Ser
GCT
[ENA]
¡û
>C141009344
CP006849
Mycoplasmatota
Mesomycoplasma hyorhinis DBS 1050 [CP006849]
515269
515179
-
Ser
GCT
[Ensembl]
¡û
>C10109461
CP002170
Mycoplasmatota
Mesomycoplasma hyorhinis HUB-1 [CP002170]
518384
518294
-
Ser
GCT
[Ensembl]
¡û
>W1510643885
CVNB01000015
Chlamydiota
Chlamydia trachomatis LGV98 [CVNB]
13613
13703
+
Ser
GCT
[ENA]
¡û
>C11114515
CP002669
Mycoplasmatota
Mesomycoplasma hyorhinis MCLD [CP002669]
794750
794840
+
Ser
GCT
[Ensembl]
¡û
>C121009171
CP003231
Mycoplasmatota
Mesomycoplasma hyorhinis GDL-1 [CP003231]
515286
515196
-
Ser
GCT
[Ensembl]
¡û
>C131009728
CP003914
Mycoplasmatota
Mesomycoplasma hyorhinis SK76 [CP003914]
518833
518743
-
Ser
GCT
[Ensembl]
¡û
Identical group No.45093 (2 seq.)
>PL191001743
LR214952
Tenericutes
Mycoplasma neurolyticum NCTC10166 plasmid:2 (LR214952)
21844
21754
-
Ser
GCT
[ENA]
¡û
>C191218106
LR214951
Mycoplasmatota
Mesomycoplasma neurolyticum NCTC10166 [LR214951]
66560
66650
+
Ser
GCT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK