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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tenericutes
Anticodon = GGT
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.463011 (7 seq.)
>PL191001845
LR215005
Tenericutes
Mycoplasma conjunctivae NCTC10147 plasmid:9 (LR215005)
35133
35058
-
Thr
GGT
[ENA]
¡û
>C191218148
LR214955
Mycoplasmatota
Mycoplasmopsis fermentans NCTC10117 [LR214955, LR214962]
274408
274333
-
Thr
GGT
-
¡û
>W1910002623
ATFG01000004
Mycoplasmatota
Mycoplasmopsis fermentans MF-I1 [ATFG]
58837
58762
-
Thr
GGT
[ENA]
¡û
>W1910002658
ATFH01000005
Mycoplasmatota
Mycoplasmopsis fermentans MF-I2 [ATFH]
58838
58763
-
Thr
GGT
[ENA]
¡û
>C09107674
AP009608
Mycoplasmatota
Mycoplasmopsis fermentans PG18 [AP009608]
187651
187576
-
Thr
GGT
[Ensembl]
¡û
>C11114260
CP001995
Mycoplasmatota
Mycoplasmopsis fermentans JER [CP001995]
115257
115182
-
Thr
GGT
[Ensembl]
¡û
>C11114295
CP002458
Mycoplasmatota
Mycoplasmopsis fermentans M64 [CP002458]
131674
131599
-
Thr
GGT
[Ensembl]
¡û
Identical group No.464037 (10 seq.)
>W131185103
ARTL01000024
Mycoplasmatota
Mesomycoplasma hyorhinis ATCC 17981 [ARTL]
40904
40829
-
Thr
GGT
[ENA]
¡û
>C171051512
CP016817
Mycoplasmatota
Mesomycoplasma hyorhinis MDBK-IPV [CP016817]
643948
644023
+
Thr
GGT
-
¡û
>PL191001719
LR214949
Tenericutes
Mycoplasma hyorhinis NCTC10121 plasmid:3 (LR214949)
650169
650244
+
Thr
GGT
[ENA]
¡û
>C191224785
LS991950
Mycoplasmatota
Mesomycoplasma hyorhinis NCTC10130 [LS991950]
645197
645272
+
Thr
GGT
-
¡û
>C141009324
CP006849
Mycoplasmatota
Mesomycoplasma hyorhinis DBS 1050 [CP006849]
644036
644111
+
Thr
GGT
[Ensembl]
¡û
>C10109441
CP002170
Mycoplasmatota
Mesomycoplasma hyorhinis HUB-1 [CP002170]
646002
646077
+
Thr
GGT
[Ensembl]
¡û
>W1510643900
CVNB01000079
Chlamydiota
Chlamydia trachomatis LGV98 [CVNB]
417
342
-
Thr
GGT
[ENA]
¡û
>C11114517
CP002669
Mycoplasmatota
Mesomycoplasma hyorhinis MCLD [CP002669]
668725
668650
-
Thr
GGT
[Ensembl]
¡û
>C121009151
CP003231
Mycoplasmatota
Mesomycoplasma hyorhinis GDL-1 [CP003231]
644053
644128
+
Thr
GGT
[Ensembl]
¡û
>C131009708
CP003914
Mycoplasmatota
Mesomycoplasma hyorhinis SK76 [CP003914]
644907
644982
+
Thr
GGT
[Ensembl]
¡û
Identical group No.525301 (2 seq.)
>PL191001777
LR214986
Tenericutes
Mycoplasma cynos NCTC10142 plasmid:13 (LR214986)
913176
913251
+
Thr
GGT
[ENA]
¡û
>C151099843
HF559394
Mycoplasmatota
Mycoplasmopsis cynos C142 [HF559394]
922025
922100
+
Thr
GGT
[Ensembl]
¡û
Identical group No.700300 (4 seq.)
>WENV180810252
ODJK01183884
[ODJK] human metagenome; G_DNA_Subgingival plaque
290
216
-
Thr
GGT
[ENA]
¢þ
>WENV180950846
ODUH01003059
[ODUH] human metagenome; G_DNA_Subgingival plaque
2704
2630
-
Thr
GGT
[ENA]
¢þ
>W141170977
AXZE01000010
Mycoplasmatota
Metamycoplasma salivarium ATCC 23064 [AXZE]
112195
112121
-
Thr
GGT
[ENA]
¡û
>PL191001683
LR214939
Tenericutes
Mycoplasma salivarium NCTC10113 plasmid:2 (LR214939)
206005
206079
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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