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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tenericutes
Anticodon = GTC
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273768 (22 seq.)
>W1710931787
LOHQ01000007
Mycoplasmatota
Mycoplasmopsis meleagridis [LOHQ]
4572
4496
-
Asp
GTC
[ENA]
¡û
>W1711167657
LVWO01000017
Mycoplasmatota
Mycoplasmopsis meleagridis [LVWO]
165797
165873
+
Asp
GTC
[ENA]
¡û
>W131182345
ARQH01000017
Mycoplasmatota
Mycoplasmopsis synoviae ATCC 25204 [ARQH]
562
638
+
Asp
GTC
[ENA]
¡û
>W131221269
AUAH01000008
Mycoplasmatota
Mycoplasmopsis arginini ATCC 23838 [AUAH]
3276
3200
-
Asp
GTC
[ENA]
¡û
>PL191001751
LR214963
Tenericutes
Mycoplasma fermentans NCTC10117 plasmid:9 (LR214963)
200347
200423
+
Asp
GTC
[ENA]
¡û
>PL191001827
LR215003
Tenericutes
Mycoplasma conjunctivae NCTC10147 plasmid:7 (LR215003)
306871
306795
-
Asp
GTC
[ENA]
¡û
>C181049463
CP021129
Mycoplasmatota
Mycoplasmopsis synoviae MS-H [CP021129]
535276
535352
+
Asp
GTC
-
¡û
>C191189300
KP704286
Mycoplasmatota
Mycoplasmopsis synoviae MS-H [KP704286]
242748
242824
+
Asp
GTC
-
¡û
>C191218600
LR215037
Mycoplasmatota
Mycoplasmopsis maculosa NCTC10168 [LR215037]
872335
872411
+
Asp
GTC
-
¡û
>C191218697
LR215042
Mycoplasmatota
Mycoplasmopsis meleagridis NCTC10153 [LR215042]
425649
425573
-
Asp
GTC
-
¡û
>C191224878
LS991953
Mycoplasmatota
Mycoplasmopsis synoviae NCTC10124 [LS991953]
568965
569041
+
Asp
GTC
-
¡û
>W141732269
JNJW01000008
Mycoplasmatota
Mycoplasmopsis iners ATCC 19705 [JNJW]
9060
8984
-
Asp
GTC
[ENA]
¡û
>W141779714
JOOB01000007
Mycoplasmatota
Mycoplasmopsis opalescens ATCC 27921 [JOOB]
141409
141333
-
Asp
GTC
[ENA]
¡û
>W1910002639
ATFG01000030
Mycoplasmatota
Mycoplasmopsis fermentans MF-I1 [ATFG]
141153
141077
-
Asp
GTC
[ENA]
¡û
>W1910002674
ATFH01000026
Mycoplasmatota
Mycoplasmopsis fermentans MF-I2 [ATFH]
81317
81241
-
Asp
GTC
[ENA]
¡û
>C09107682
AP009608
Mycoplasmatota
Mycoplasmopsis fermentans PG18 [AP009608]
74443
74367
-
Asp
GTC
[Ensembl]
¡û
>C151076510
CP011096
Mycoplasmatota
Mycoplasmopsis synoviae ATCC 25204 WVU1853 [CP011096]
562180
562256
+
Asp
GTC
[Ensembl]
¡û
>C11114254
CP001995
Mycoplasmatota
Mycoplasmopsis fermentans JER [CP001995]
616918
616842
-
Asp
GTC
[Ensembl]
¡û
>C11114289
CP002458
Mycoplasmatota
Mycoplasmopsis fermentans M64 [CP002458]
693715
693639
-
Asp
GTC
[Ensembl]
¡û
>W1511555805
JZXN01000014
Mycoplasmatota
Mycoplasmopsis meleagridis ATCC 25294 [JZXN]
109478
109554
+
Asp
GTC
[ENA]
¡û
>W1610789256
LOHQ01000007
Mycoplasmatota
Mycoplasmopsis meleagridis [LOHQ]
4572
4496
-
Asp
GTC
[ENA]
¡û
>W1610977726
LVWO01000017
Mycoplasmatota
Mycoplasmopsis meleagridis [LVWO]
165797
165873
+
Asp
GTC
[ENA]
¡û
Identical group No.282967 (44 seq.)
>W131098167
AORG01000014
Mycoplasmatota
Mycoplasmopsis arginini 7264 [AORG]
11768
11692
-
Asp
GTC
[ENA]
¡û
>W131098211
AORI01000008
Mycoplasmatota
Metamycoplasma auris 15026 [AORI]
39987
40063
+
Asp
GTC
[ENA]
¡û
>W131214569
ATUH01000001
Mycoplasmatota
Metamycoplasma orale ATCC 23714 [ATUH]
20043
20119
+
Asp
GTC
[ENA]
¡û
>W141051167
AMWK01000006
Mycoplasmatota
Metamycoplasma alkalescens 14918 [AMWK]
49416
49340
-
Asp
GTC
[ENA]
¡û
>WENV180900050
ODOJ01000337
[ODOJ] human metagenome; G_DNA_Tongue dorsum
19560
19636
+
Asp
GTC
[ENA]
¢þ
>WENV181075191
OEAO01082934
[OEAO] human metagenome; G_DNA_Tongue dorsum
143
219
+
Asp
GTC
[ENA]
¢þ
>WENV181080665
OEAS01066294
[OEAS] human metagenome; G_DNA_Supragingival plaque
641
565
-
Asp
GTC
[ENA]
¢þ
>WENV181092207
OEBC01331892
[OEBC] human metagenome; G_DNA_Supragingival plaque
114
38
-
Asp
GTC
[ENA]
¢þ
>WENV181103282
OECT01058913
[OECT] human metagenome; G_DNA_Tongue dorsum
276
200
-
Asp
GTC
[ENA]
¢þ
>WENV181113701
OEEL01070277
[OEEL] human metagenome; G_DNA_Tongue dorsum
235
159
-
Asp
GTC
[ENA]
¢þ
>WENV181179178
OEJT01001741
[OEJT] human metagenome; G_DNA_Supragingival plaque
1655
1579
-
Asp
GTC
[ENA]
¢þ
>W141170967
AXZE01000009
Mycoplasmatota
Metamycoplasma salivarium ATCC 23064 [AXZE]
285801
285725
-
Asp
GTC
[ENA]
¡û
>C08006413
CP001047
Mycoplasmatota
Metamycoplasma arthritidis 158L3-1 [CP001047]
247783
247710
-
Asp
GTC
[Ensembl]
¡û
>PL191001709
LR214939
Tenericutes
Mycoplasma salivarium NCTC10113 plasmid:2 (LR214939)
161863
161787
-
Asp
GTC
[ENA]
¡û
>C181176688
CP029295
Mycoplasmatota
[Mycoplasma] phocae 105 [CP029295]
588546
588470
-
Asp
GTC
-
¡û
>C181188021
CP030103
Mycoplasmatota
Metamycoplasma cloacale NCTC 10199 [CP030103]
376322
376398
+
Asp
GTC
-
¡û
>C181188628
CP030140
Mycoplasmatota
[Mycoplasma] anseris ATCC 49234 [CP030140]
744774
744850
+
Asp
GTC
-
¡û
>C191099508
CP033058
Mycoplasmatota
Metamycoplasma phocicerebrale 1049 [CP033058]
91628
91552
-
Asp
GTC
-
¡û
>C191118060
CP034044
Mycoplasmatota
Mycoplasma struthionis 237IA [CP034044]
639094
639018
-
Asp
GTC
-
¡û
>C191218017
LR214940
Mycoplasmatota
Metamycoplasma orale NCTC10112 [LR214940]
582823
582899
+
Asp
GTC
-
¡û
>C191218762
LR215044
Mycoplasmatota
Mycoplasmopsis arginini NCTC10129 [LR215044]
430589
430513
-
Asp
GTC
-
¡û
>C191218799
LR215047
Mycoplasmatota
Metamycoplasma arthritidis NCTC10162 [LR215047]
247695
247619
-
Asp
GTC
-
¡û
>C191218867
LR215049
Mycoplasmatota
Metamycoplasma cloacale NCTC10199 [LR215049]
368798
368722
-
Asp
GTC
-
¡û
>C191224755
LS991949
Mycoplasmatota
Metamycoplasma alkalescens NCTC10135 [LS991949]
121628
121704
+
Asp
GTC
-
¡û
>W141557510
JHVF01000003
Mycoplasmatota
Metamycoplasma spumans ATCC 19526 [JHVF]
82664
82588
-
Asp
GTC
[ENA]
¡û
>W141731814
JNJL01000016
Mycoplasmatota
Metamycoplasma cloacale ATCC 35276 [JNJL]
11892
11816
-
Asp
GTC
[ENA]
¡û
>W141732292
JNJX01000004
Mycoplasmatota
[Mycoplasma] anseris ATCC 49234 [JNJX]
33588
33512
-
Asp
GTC
[ENA]
¡û
>W1910236620
FPIG01000003
Chlamydiota
Chlamydia abortus AB7 [FPIG]
33071
32995
-
Asp
GTC
[ENA]
¡û
>W1910238020
FPLQ01000011
Chlamydiota
Chlamydia abortus C2_98 [FPLQ]
12410
12486
+
Asp
GTC
[ENA]
¡û
>W1910238588
FPMH01000005
Mycoplasmatota
Mycoplasmopsis arginini C10_98 [FPMH]
11759
11683
-
Asp
GTC
[ENA]
¡û
>W1910238675
FPMJ01000002
Chlamydiota
Chlamydia abortus 99DC4 [FPMJ]
74183
74259
+
Asp
GTC
[ENA]
¡û
>W1910238966
FPMR01000010
Mycoplasmatota
Mycoplasmopsis arginini C7_98 [FPMR]
11417
11341
-
Asp
GTC
[ENA]
¡û
>W1910239052
FPMT01000191
Chlamydiota
Chlamydia abortus C20_98 [FPMT]
798
722
-
Asp
GTC
[ENA]
¡û
>W1910239138
FPMU01000143
Chlamydiota
Chlamydia abortus 03DC36 [FPMU]
567
491
-
Asp
GTC
[ENA]
¡û
>W1910281376
FQTM01000408
Chlamydiota
Chlamydia abortus 162STDY5437294 [FQTM]
289
365
+
Asp
GTC
[ENA]
¡û
>W1810232239
PPCB01000197
Campylobacterota
Campylobacter concisus AAUH-5CDo [PPCB]
459
535
+
Asp
GTC
[ENA]
¡û
>W1810585946
QFDN01000005
Mycoplasmatota
Mycoplasmopsis arginini NGR_2017 [QFDN]
12055
11979
-
Asp
GTC
[ENA]
¡û
>W1810657076
QJGS01000002
Mycoplasmatota
Metamycoplasma phocicerebrale 1049 [QJGS]
87114
87038
-
Asp
GTC
[ENA]
¡û
>W1810675908
QKLP01000013
Mycoplasmatota
Metamycoplasma alkalescens ATCC 29103 [QKLP]
11334
11258
-
Asp
GTC
[ENA]
¡û
>W1810682377
QKUB01000001
Mycoplasmatota
Metamycoplasma auris ATCC 51348 [QKUB]
102438
102514
+
Asp
GTC
[ENA]
¡û
>C151002647
AP014631
Mycoplasmatota
Metamycoplasma canadense HAZ360_1 [AP014631]
551137
551213
+
Asp
GTC
[Ensembl]
¡û
>W1510644823
CVNU01000004
Chlamydiota
Chlamydia trachomatis R36176extract [CVNU]
37416
37492
+
Asp
GTC
[ENA]
¡û
>W1510644894
CVNV01000011
Chlamydiota
Chlamydia trachomatis R3059extract [CVNV]
3048
3124
+
Asp
GTC
[ENA]
¡û
>C161001007
AP014657
Mycoplasmatota
Mycoplasmopsis arginini HAZ145_1 [AP014657]
199012
198936
-
Asp
GTC
[Ensembl]
¡û
Identical group No.464052 (14 seq.)
>W1711149196
LVLH01000014
Mycoplasmatota
Mycoplasmopsis gallinarum [LVLH]
30995
30920
-
Asp
GTC
[ENA]
¡û
>W131185087
ARTL01000016
Mycoplasmatota
Mesomycoplasma hyorhinis ATCC 17981 [ARTL]
11658
11733
+
Asp
GTC
[ENA]
¡û
>C171051530
CP016817
Mycoplasmatota
Mesomycoplasma hyorhinis MDBK-IPV [CP016817]
520975
520900
-
Asp
GTC
-
¡û
>PL191001737
LR214949
Tenericutes
Mycoplasma hyorhinis NCTC10121 plasmid:3 (LR214949)
524467
524392
-
Asp
GTC
[ENA]
¡û
>C191224803
LS991950
Mycoplasmatota
Mesomycoplasma hyorhinis NCTC10130 [LS991950]
524732
524657
-
Asp
GTC
-
¡û
>W141562436
JHZE01000008
Mycoplasmatota
Mycoplasmopsis gallinarum DSM 19816 [JHZE]
172447
172522
+
Asp
GTC
[ENA]
¡û
>W141731614
JNJG01000009
Mycoplasmatota
Mycoplasma simbae ATCC 49888 [JNJG]
38254
38179
-
Asp
GTC
[ENA]
¡û
>C141009342
CP006849
Mycoplasmatota
Mesomycoplasma hyorhinis DBS 1050 [CP006849]
521076
521001
-
Asp
GTC
[Ensembl]
¡û
>C10109459
CP002170
Mycoplasmatota
Mesomycoplasma hyorhinis HUB-1 [CP002170]
524190
524115
-
Asp
GTC
[Ensembl]
¡û
>W1510643883
CVNB01000015
Chlamydiota
Chlamydia trachomatis LGV98 [CVNB]
7806
7881
+
Asp
GTC
[ENA]
¡û
>C11114513
CP002669
Mycoplasmatota
Mesomycoplasma hyorhinis MCLD [CP002669]
788943
789018
+
Asp
GTC
[Ensembl]
¡û
>C121009169
CP003231
Mycoplasmatota
Mesomycoplasma hyorhinis GDL-1 [CP003231]
521093
521018
-
Asp
GTC
[Ensembl]
¡û
>C131009726
CP003914
Mycoplasmatota
Mesomycoplasma hyorhinis SK76 [CP003914]
524640
524565
-
Asp
GTC
[Ensembl]
¡û
>W1610959736
LVLH01000014
Mycoplasmatota
Mycoplasmopsis gallinarum [LVLH]
30995
30920
-
Asp
GTC
[ENA]
¡û
Identical group No.491571 (12 seq.)
>W1711799338
MWWN01000002
Mycoplasmatota
Mesomycoplasma hyopneumoniae [MWWN]
235297
235372
+
Asp
GTC
[ENA]
¡û
>W1711942868
NBBN01000186
Mycoplasmatota
Mesomycoplasma hyopneumoniae [NBBN]
3706
3631
-
Asp
GTC
[ENA]
¡û
>C013560
AE017332
Mycoplasmatota
Mesomycoplasma hyopneumoniae 232 [AE017332]
337990
338065
+
Asp
GTC
[Ensembl]
¡û
>C013606
AE017244
Mycoplasmatota
Mesomycoplasma hyopneumoniae 7448 [AE017244]
110800
110725
-
Asp
GTC
[Ensembl]
¡û
>C013636
AE017243
Mycoplasmatota
Mesomycoplasma hyopneumoniae J [AE017243]
104063
103988
-
Asp
GTC
[Ensembl]
¡û
>PL191001803
LR214993
Tenericutes
Mycoplasma hyopneumoniae NCTC10127 plasmid:2 (LR214993)
245211
245286
+
Asp
GTC
[ENA]
¡û
>C181071546
CP022714
Mycoplasmatota
Mesomycoplasma hyopneumoniae KM014 [CP022714]
347424
347349
-
Asp
GTC
-
¡û
>C191161540
CP038641
Mycoplasmatota
Mesomycoplasma hyopneumoniae ES-2 [CP038641]
109528
109453
-
Asp
GTC
-
¡û
>W1510472746
CQIE01000258
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 CH43 [CQIE]
194
119
-
Asp
GTC
[ENA]
¡û
>C11114492
CP002274
Mycoplasmatota
Mesomycoplasma hyopneumoniae 168 [CP002274]
103980
103905
-
Asp
GTC
[Ensembl]
¡û
>C131002165
CP003131
Mycoplasmatota
Mesomycoplasma hyopneumoniae 168-L [CP003131]
103923
103848
-
Asp
GTC
[Ensembl]
¡û
>C131007181
CP003802
Mycoplasmatota
Mesomycoplasma hyopneumoniae 7422 [CP003802]
110695
110620
-
Asp
GTC
[Ensembl]
¡û
Identical group No.525298 (7 seq.)
>PL191001768
LR214986
Tenericutes
Mycoplasma cynos NCTC10142 plasmid:13 (LR214986)
217186
217261
+
Asp
GTC
[ENA]
¡û
>C181093505
CP024049
Mycoplasmatota
Mycoplasmopsis bovirhinis GS01 [CP024049]
712558
712483
-
Asp
GTC
-
¡û
>C191001035
AP018135
Mycoplasmatota
Mycoplasmopsis bovirhinis HAZ141_2 [AP018135]
87383
87308
-
Asp
GTC
-
¡û
>C191218253
LR214972
Mycoplasmatota
Mycoplasmopsis bovirhinis NCTC10118 [LR214972]
710116
710191
+
Asp
GTC
-
¡û
>C191218575
LR215036
Mycoplasmatota
Mycoplasmopsis citelli NCTC10181 [LR215036]
463312
463237
-
Asp
GTC
-
¡û
>W141731321
JNIZ01000004
Mycoplasmatota
Mycoplasmopsis sturni DSM 22021 [JNIZ]
3275
3350
+
Asp
GTC
[ENA]
¡û
>C151099834
HF559394
Mycoplasmatota
Mycoplasmopsis cynos C142 [HF559394]
211758
211833
+
Asp
GTC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK