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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tenericutes
Anticodon = GTG
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281195 (7 seq.)
>PL191001836
LR215003
Tenericutes
Mycoplasma conjunctivae NCTC10147 plasmid:7 (LR215003)
36639
36563
-
His
GTG
[ENA]
¡û
>C191218139
LR214955
Mycoplasmatota
Mycoplasmopsis fermentans NCTC10117 [LR214955, LR214962]
209389
209465
+
His
GTG
-
¡û
>W1910002622
ATFG01000004
Mycoplasmatota
Mycoplasmopsis fermentans MF-I1 [ATFG]
17640
17716
+
His
GTG
[ENA]
¡û
>W1910002657
ATFH01000005
Mycoplasmatota
Mycoplasmopsis fermentans MF-I2 [ATFH]
17640
17716
+
His
GTG
[ENA]
¡û
>C09107675
AP009608
Mycoplasmatota
Mycoplasmopsis fermentans PG18 [AP009608]
147875
147799
-
His
GTG
[Ensembl]
¡û
>C11114231
CP001995
Mycoplasmatota
Mycoplasmopsis fermentans JER [CP001995]
74054
74130
+
His
GTG
[Ensembl]
¡û
>C11114266
CP002458
Mycoplasmatota
Mycoplasmopsis fermentans M64 [CP002458]
66877
66953
+
His
GTG
[Ensembl]
¡û
Identical group No.464048 (9 seq.)
>W131185078
ARTL01000011
Mycoplasmatota
Mesomycoplasma hyorhinis ATCC 17981 [ARTL]
2125
2050
-
His
GTG
[ENA]
¡û
>C171051511
CP016817
Mycoplasmatota
Mesomycoplasma hyorhinis MDBK-IPV [CP016817]
575643
575718
+
His
GTG
-
¡û
>PL191001718
LR214949
Tenericutes
Mycoplasma hyorhinis NCTC10121 plasmid:3 (LR214949)
581868
581943
+
His
GTG
[ENA]
¡û
>C191224784
LS991950
Mycoplasmatota
Mesomycoplasma hyorhinis NCTC10130 [LS991950]
576871
576946
+
His
GTG
-
¡û
>C141009323
CP006849
Mycoplasmatota
Mesomycoplasma hyorhinis DBS 1050 [CP006849]
575732
575807
+
His
GTG
[Ensembl]
¡û
>C10109440
CP002170
Mycoplasmatota
Mesomycoplasma hyorhinis HUB-1 [CP002170]
576131
576206
+
His
GTG
[Ensembl]
¡û
>C11114516
CP002669
Mycoplasmatota
Mesomycoplasma hyorhinis MCLD [CP002669]
737019
736944
-
His
GTG
[Ensembl]
¡û
>C121009150
CP003231
Mycoplasmatota
Mesomycoplasma hyorhinis GDL-1 [CP003231]
575749
575824
+
His
GTG
[Ensembl]
¡û
>C131009707
CP003914
Mycoplasmatota
Mesomycoplasma hyorhinis SK76 [CP003914]
576579
576654
+
His
GTG
[Ensembl]
¡û
Identical group No.490663 (10 seq.)
>PL191001772
LR214986
Tenericutes
Mycoplasma cynos NCTC10142 plasmid:13 (LR214986)
575226
575301
+
His
GTG
[ENA]
¡û
>C191218370
LR215010
Mycoplasmatota
Mycoplasmopsis canis NCTC10146 [LR215010]
343230
343155
-
His
GTG
-
¡û
>W141558749
JHWE01000006
Mycoplasmatota
Mycoplasma leonicaptivi ATCC 49890 [JHWE]
19699
19624
-
His
GTG
[ENA]
¡û
>C151099838
HF559394
Mycoplasmatota
Mycoplasmopsis cynos C142 [HF559394]
550965
551040
+
His
GTG
[Ensembl]
¡û
>C161070562
CP014281
Mycoplasmatota
Mycoplasmopsis canis PG 14 [CP014281]
60829
60754
-
His
GTG
-
¡û
>W121060452
AJFQ01000002
Mycoplasmatota
Mycoplasmopsis canis PG 14 [AJFQ]
6942
6867
-
His
GTG
[ENA]
¡û
>W121060483
AJFR01000001
Mycoplasmatota
Mycoplasmopsis canis UF31 [AJFR]
86999
86924
-
His
GTG
[ENA]
¡û
>W121060514
AJFS01000001
Mycoplasmatota
Mycoplasmopsis canis UF33 [AJFS]
86981
86906
-
His
GTG
[ENA]
¡û
>W121060545
AJFT01000001
Mycoplasmatota
Mycoplasmopsis canis UFG1 [AJFT]
86954
86879
-
His
GTG
[ENA]
¡û
>W121060576
AJFU01000002
Mycoplasmatota
Mycoplasmopsis canis UFG4 [AJFU]
15583
15658
+
His
GTG
[ENA]
¡û
Identical group No.491570 (12 seq.)
>W1711799328
MWWN01000002
Mycoplasmatota
Mesomycoplasma hyopneumoniae [MWWN]
185970
186045
+
His
GTG
[ENA]
¡û
>W1711942859
NBBN01000158
Mycoplasmatota
Mesomycoplasma hyopneumoniae [NBBN]
267
342
+
His
GTG
[ENA]
¡û
>C013550
AE017332
Mycoplasmatota
Mesomycoplasma hyopneumoniae 232 [AE017332]
288652
288727
+
His
GTG
[Ensembl]
¡û
>C013596
AE017244
Mycoplasmatota
Mesomycoplasma hyopneumoniae 7448 [AE017244]
160663
160588
-
His
GTG
[Ensembl]
¡û
>C013626
AE017243
Mycoplasmatota
Mesomycoplasma hyopneumoniae J [AE017243]
153378
153303
-
His
GTG
[Ensembl]
¡û
>PL191001793
LR214993
Tenericutes
Mycoplasma hyopneumoniae NCTC10127 plasmid:2 (LR214993)
195867
195942
+
His
GTG
[ENA]
¡û
>C181071536
CP022714
Mycoplasmatota
Mesomycoplasma hyopneumoniae KM014 [CP022714]
391499
391424
-
His
GTG
-
¡û
>C191161530
CP038641
Mycoplasmatota
Mesomycoplasma hyopneumoniae ES-2 [CP038641]
158959
158884
-
His
GTG
-
¡û
>W1510472734
CQIE01000125
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 CH43 [CQIE]
162
237
+
His
GTG
[ENA]
¡û
>C11114467
CP002274
Mycoplasmatota
Mesomycoplasma hyopneumoniae 168 [CP002274]
202595
202670
+
His
GTG
[Ensembl]
¡û
>C131002140
CP003131
Mycoplasmatota
Mesomycoplasma hyopneumoniae 168-L [CP003131]
202552
202627
+
His
GTG
[Ensembl]
¡û
>C131007171
CP003802
Mycoplasmatota
Mesomycoplasma hyopneumoniae 7422 [CP003802]
179646
179571
-
His
GTG
[Ensembl]
¡û
Identical group No.516377 (6 seq.)
>WENV180751809
ODHS01181213
[ODHS] human metagenome; G_DNA_Supragingival plaque
176
101
-
His
GTG
[ENA]
¢þ
>WENV180788641
ODIS01087599
[ODIS] human metagenome; G_DNA_Supragingival plaque
467
542
+
His
GTG
[ENA]
¢þ
>WENV180951038
ODUH01006834
[ODUH] human metagenome; G_DNA_Subgingival plaque
2688
2613
-
His
GTG
[ENA]
¢þ
>WENV181178775
OEJT01000250
[OEJT] human metagenome; G_DNA_Supragingival plaque
12580
12505
-
His
GTG
[ENA]
¢þ
>W141170973
AXZE01000010
Mycoplasmatota
Metamycoplasma salivarium ATCC 23064 [AXZE]
80680
80755
+
His
GTG
[ENA]
¡û
>PL191001697
LR214939
Tenericutes
Mycoplasma salivarium NCTC10113 plasmid:2 (LR214939)
237520
237445
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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