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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tenericutes
Anticodon = TAA
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.94490 (5 seq.)
>WENV180950737
ODUH01001173
[ODUH] human metagenome; G_DNA_Subgingival plaque
4629
4716
+
Leu
TAA
[ENA]
¢þ
>WENV181062793
ODYO01026637
[ODYO] human metagenome; G_DNA_Palatine Tonsils
285
372
+
Leu
TAA
[ENA]
¢þ
>WENV181178572
OEJT01000066
[OEJT] human metagenome; G_DNA_Supragingival plaque
50770
50857
+
Leu
TAA
[ENA]
¢þ
>W141170979
AXZE01000012
Mycoplasmatota
Metamycoplasma salivarium ATCC 23064 [AXZE]
50701
50788
+
Leu
TAA
[ENA]
¡û
>PL191001685
LR214939
Tenericutes
Mycoplasma salivarium NCTC10113 plasmid:2 (LR214939)
387185
387272
+
Leu
TAA
[ENA]
¡û
Identical group No.112793 (72 seq.)
>W1710931767
LOHQ01000002
Mycoplasmatota
Mycoplasmopsis meleagridis [LOHQ]
105598
105512
-
Leu
TAA
[ENA]
¡û
>W1710999012
LQDA01000044
Mycoplasmatota
Mycoplasmopsis bovis [LQDA]
7418
7332
-
Leu
TAA
[ENA]
¡û
>W1710999045
LQDB01000045
Mycoplasmatota
Mycoplasmopsis bovis [LQDB]
7363
7277
-
Leu
TAA
[ENA]
¡û
>W1710999254
LQDG01000043
Mycoplasmatota
Mycoplasmopsis bovis [LQDG]
7843
7757
-
Leu
TAA
[ENA]
¡û
>W1710999286
LQDH01000054
Mycoplasmatota
Mycoplasmopsis bovis [LQDH]
795
881
+
Leu
TAA
[ENA]
¡û
>W1710999382
LQDJ01000070
Mycoplasmatota
Mycoplasmopsis bovis [LQDJ]
7521
7435
-
Leu
TAA
[ENA]
¡û
>W1710999492
LQDM01000046
Mycoplasmatota
Mycoplasmopsis bovis [LQDM]
7843
7757
-
Leu
TAA
[ENA]
¡û
>W1710999611
LQDP01000040
Mycoplasmatota
Mycoplasmopsis bovis [LQDP]
7560
7474
-
Leu
TAA
[ENA]
¡û
>W1710999687
LQDR01000045
Mycoplasmatota
Mycoplasmopsis bovis [LQDR]
7843
7757
-
Leu
TAA
[ENA]
¡û
>W1710999756
LQDT01000036
Mycoplasmatota
Mycoplasmopsis bovis [LQDT]
7376
7290
-
Leu
TAA
[ENA]
¡û
>W1710999794
LQDU01000039
Mycoplasmatota
Mycoplasmopsis bovis [LQDU]
7843
7757
-
Leu
TAA
[ENA]
¡û
>W1710999824
LQDV01000035
Mycoplasmatota
Mycoplasmopsis bovis [LQDV]
7843
7757
-
Leu
TAA
[ENA]
¡û
>W1710999900
LQDX01000038
Mycoplasmatota
Mycoplasmopsis bovis [LQDX]
7560
7474
-
Leu
TAA
[ENA]
¡û
>W1711000161
LQED01000043
Mycoplasmatota
Mycoplasmopsis bovis [LQED]
7843
7757
-
Leu
TAA
[ENA]
¡û
>W1711000233
LQEF01000045
Mycoplasmatota
Mycoplasmopsis bovis [LQEF]
7376
7290
-
Leu
TAA
[ENA]
¡û
>W1711000631
LQEO01000037
Mycoplasmatota
Mycoplasmopsis bovis [LQEO]
7294
7208
-
Leu
TAA
[ENA]
¡û
>W1711000975
LQEW01000042
Mycoplasmatota
Mycoplasmopsis bovis [LQEW]
7560
7474
-
Leu
TAA
[ENA]
¡û
>W1711001072
LQEY01000058
Mycoplasmatota
Mycoplasmopsis bovis [LQEY]
7521
7435
-
Leu
TAA
[ENA]
¡û
>W1711001231
LQFC01000049
Mycoplasmatota
Mycoplasmopsis bovis [LQFC]
7521
7435
-
Leu
TAA
[ENA]
¡û
>W1711001339
LQFF01000034
Mycoplasmatota
Mycoplasmopsis bovis [LQFF]
7332
7246
-
Leu
TAA
[ENA]
¡û
>W1711001989
LQFU01000043
Mycoplasmatota
Mycoplasmopsis bovis [LQFU]
7433
7347
-
Leu
TAA
[ENA]
¡û
>W1711149217
LVLH01000035
Mycoplasmatota
Mycoplasmopsis gallinarum [LVLH]
16665
16579
-
Leu
TAA
[ENA]
¡û
>W1711167659
LVWO01000017
Mycoplasmatota
Mycoplasmopsis meleagridis [LVWO]
129033
128947
-
Leu
TAA
[ENA]
¡û
>C171097592
CP019639
Mycoplasmatota
Mycoplasmopsis bovis 08M [CP019639]
821976
822062
+
Leu
TAA
-
¡û
>C012872
CU179680
Mycoplasmatota
Mycoplasmopsis agalactiae PG2 [CU179680]
694193
694279
+
Leu
TAA
[Ensembl]
¡û
>PL191001758
LR214964
Tenericutes
Mycoplasma fermentans NCTC10117 plasmid:10 (LR214964)
19480
19394
-
Leu
TAA
[ENA]
¡û
>PL191001819
LR215003
Tenericutes
Mycoplasma conjunctivae NCTC10147 plasmid:7 (LR215003)
532758
532672
-
Leu
TAA
[ENA]
¡û
>C181069085
CP022586
Mycoplasmatota
Mycoplasmopsis bovis MJ2 [CP022586]
778941
779027
+
Leu
TAA
-
¡û
>C181069132
CP022587
Mycoplasmatota
Mycoplasmopsis bovis MJ3 [CP022587]
814232
814318
+
Leu
TAA
-
¡û
>C181069166
CP022588
Mycoplasmatota
Mycoplasmopsis bovis MJ4 [CP022588]
852294
852380
+
Leu
TAA
-
¡û
>C181069200
CP022589
Mycoplasmatota
Mycoplasmopsis bovis NADC18 [CP022589]
886914
887000
+
Leu
TAA
-
¡û
>C181069234
CP022590
Mycoplasmatota
Mycoplasmopsis bovis NADC54 [CP022590]
915367
915453
+
Leu
TAA
-
¡û
>C181069268
CP022591
Mycoplasmatota
Mycoplasmopsis bovis NADC55 [CP022591]
931457
931543
+
Leu
TAA
-
¡û
>C181069288
CP022592
Mycoplasmatota
Mycoplasmopsis bovis NADC56 [CP022592]
854954
855040
+
Leu
TAA
-
¡û
>C181069323
CP022593
Mycoplasmatota
Mycoplasmopsis bovis NADC57 [CP022593]
785366
785452
+
Leu
TAA
-
¡û
>C181069370
CP022594
Mycoplasmatota
Mycoplasmopsis bovis NADC58 [CP022594]
867435
867521
+
Leu
TAA
-
¡û
>C181069404
CP022595
Mycoplasmatota
Mycoplasmopsis bovis NADC62 [CP022595]
927964
928050
+
Leu
TAA
-
¡û
>C181069438
CP022596
Mycoplasmatota
Mycoplasmopsis bovis NADC67 [CP022596]
899097
899183
+
Leu
TAA
-
¡û
>C181069472
CP022597
Mycoplasmatota
Mycoplasmopsis bovis NADC68 [CP022597]
890114
890200
+
Leu
TAA
-
¡û
>C181069506
CP022598
Mycoplasmatota
Mycoplasmopsis bovis NADC70 [CP022598]
874387
874473
+
Leu
TAA
-
¡û
>C181069540
CP022599
Mycoplasmatota
Mycoplasmopsis bovis NADC61 [CP022599]
886768
886854
+
Leu
TAA
-
¡û
>C181088355
CP023663
Mycoplasmatota
Mycoplasmopsis bovis Ningxia-1 [CP023663]
848866
848952
+
Leu
TAA
-
¡û
>C181218542
LT578418
Mycoplasmatota
Mycoplasmopsis agalactiae [LT578418]
15721
15635
-
Leu
TAA
-
¡û
>C181218564
LT578453
Mycoplasmatota
Mycoplasmopsis bovis [LT578453]
806538
806624
+
Leu
TAA
-
¡û
>C191162637
CP038861
Mycoplasmatota
Mycoplasmopsis bovis 16M [CP038861]
813498
813584
+
Leu
TAA
-
¡û
>C191218583
LR215037
Mycoplasmatota
Mycoplasmopsis maculosa NCTC10168 [LR215037]
422678
422764
+
Leu
TAA
-
¡û
>C191218681
LR215042
Mycoplasmatota
Mycoplasmopsis meleagridis NCTC10153 [LR215042]
462413
462499
+
Leu
TAA
-
¡û
>W141562419
JHZE01000006
Mycoplasmatota
Mycoplasmopsis gallinarum DSM 19816 [JHZE]
15651
15565
-
Leu
TAA
[ENA]
¡û
>W141732219
JNJV01000013
Mycoplasmatota
Mycoplasmopsis primatum ATCC 25948 [JNJV]
21203
21117
-
Leu
TAA
[ENA]
¡û
>W141732274
JNJW01000014
Mycoplasmatota
Mycoplasmopsis iners ATCC 19705 [JNJW]
15655
15569
-
Leu
TAA
[ENA]
¡û
>W1910002644
ATFG01000040
Mycoplasmatota
Mycoplasmopsis fermentans MF-I1 [ATFG]
277
191
-
Leu
TAA
[ENA]
¡û
>W1910002679
ATFH01000035
Mycoplasmatota
Mycoplasmopsis fermentans MF-I2 [ATFH]
278
192
-
Leu
TAA
[ENA]
¡û
>W1910598022
LAUS01000003
Mycoplasmatota
Mycoplasmopsis bovis 8790 [LAUS]
65883
65797
-
Leu
TAA
[ENA]
¡û
>W1910598055
LAUT01000009
Mycoplasmatota
Mycoplasmopsis bovis 1067 [LAUT]
7473
7387
-
Leu
TAA
[ENA]
¡û
>C09107661
AP009608
Mycoplasmatota
Mycoplasmopsis fermentans PG18 [AP009608]
600151
600237
+
Leu
TAA
[Ensembl]
¡û
>W1910657484
MAQC01000014
Mycoplasmatota
Mycoplasmopsis bovis HS-130614 [MAQC]
7282
7196
-
Leu
TAA
[ENA]
¡û
>C151007537
CP005933
Mycoplasmatota
Mycoplasmopsis bovis CQ-W70 [CP005933]
766293
766379
+
Leu
TAA
[Ensembl]
¡û
>C151081119
CP011348
Mycoplasmatota
Mycoplasmopsis bovis NM 2012 [CP011348]
806229
806315
+
Leu
TAA
[Ensembl]
¡û
>C11113958
CP002513
Mycoplasmatota
Mycoplasmopsis bovis Hubei-1 [CP002513]
765887
765973
+
Leu
TAA
[Ensembl]
¡û
>C11113979
CP002188
Mycoplasmatota
Mycoplasmopsis bovis PG45 [CP002188]
804139
804225
+
Leu
TAA
[Ensembl]
¡û
>C11114246
CP001995
Mycoplasmatota
Mycoplasmopsis fermentans JER [CP001995]
790307
790221
-
Leu
TAA
[Ensembl]
¡û
>C11114281
CP002458
Mycoplasmatota
Mycoplasmopsis fermentans M64 [CP002458]
919016
918930
-
Leu
TAA
[Ensembl]
¡û
>W1511555807
JZXN01000014
Mycoplasmatota
Mycoplasmopsis meleagridis ATCC 25294 [JZXN]
72714
72628
-
Leu
TAA
[ENA]
¡û
>C121001902
CP002058
Mycoplasmatota
Mycoplasmopsis bovis HB0801 [CP002058]
801846
801932
+
Leu
TAA
[Ensembl]
¡û
>C121016405
FP671138
Mycoplasmatota
Mycoplasmopsis agalactiae 5632 [FP671138]
762107
762193
+
Leu
TAA
[Ensembl]
¡û
>C161017442
CP007589
Mycoplasmatota
Mycoplasmopsis bovis HB0801-P115 [CP007589]
801736
801822
+
Leu
TAA
-
¡û
>C161017476
CP007590
Mycoplasmatota
Mycoplasmopsis bovis HB0801-P150 [CP007590]
801719
801805
+
Leu
TAA
-
¡û
>C161017510
CP007591
Mycoplasmatota
Mycoplasmopsis bovis HB0801-P180 [CP007591]
801682
801768
+
Leu
TAA
-
¡û
>W121065152
AJPR01000004
Mycoplasmatota
Mycoplasmopsis agalactiae 14628 [AJPR]
66367
66453
+
Leu
TAA
[ENA]
¡û
>W1610789236
LOHQ01000002
Mycoplasmatota
Mycoplasmopsis meleagridis [LOHQ]
105598
105512
-
Leu
TAA
[ENA]
¡û
>W1610959757
LVLH01000035
Mycoplasmatota
Mycoplasmopsis gallinarum [LVLH]
16665
16579
-
Leu
TAA
[ENA]
¡û
>W1610977728
LVWO01000017
Mycoplasmatota
Mycoplasmopsis meleagridis [LVWO]
129033
128947
-
Leu
TAA
[ENA]
¡û
Identical group No.114488 (10 seq.)
>W131185095
ARTL01000024
Mycoplasmatota
Mesomycoplasma hyorhinis ATCC 17981 [ARTL]
18002
18088
+
Leu
TAA
[ENA]
¡û
>C171051514
CP016817
Mycoplasmatota
Mesomycoplasma hyorhinis MDBK-IPV [CP016817]
666830
666744
-
Leu
TAA
-
¡û
>PL191001721
LR214949
Tenericutes
Mycoplasma hyorhinis NCTC10121 plasmid:3 (LR214949)
673051
672965
-
Leu
TAA
[ENA]
¡û
>C191224787
LS991950
Mycoplasmatota
Mesomycoplasma hyorhinis NCTC10130 [LS991950]
668099
668013
-
Leu
TAA
-
¡û
>C141009326
CP006849
Mycoplasmatota
Mesomycoplasma hyorhinis DBS 1050 [CP006849]
666917
666831
-
Leu
TAA
[Ensembl]
¡û
>C10109443
CP002170
Mycoplasmatota
Mesomycoplasma hyorhinis HUB-1 [CP002170]
668928
668842
-
Leu
TAA
[Ensembl]
¡û
>W1510643870
CVNB01000014
Chlamydiota
Chlamydia trachomatis LGV98 [CVNB]
10844
10930
+
Leu
TAA
[ENA]
¡û
>C11114497
CP002669
Mycoplasmatota
Mesomycoplasma hyorhinis MCLD [CP002669]
645841
645927
+
Leu
TAA
[Ensembl]
¡û
>C121009153
CP003231
Mycoplasmatota
Mesomycoplasma hyorhinis GDL-1 [CP003231]
666934
666848
-
Leu
TAA
[Ensembl]
¡û
>C131009710
CP003914
Mycoplasmatota
Mesomycoplasma hyorhinis SK76 [CP003914]
667829
667743
-
Leu
TAA
[Ensembl]
¡û
Identical group No.157100 (16 seq.)
>W1711799329
MWWN01000002
Mycoplasmatota
Mesomycoplasma hyopneumoniae [MWWN]
192126
192211
+
Leu
TAA
[ENA]
¡û
>C013551
AE017332
Mycoplasmatota
Mesomycoplasma hyopneumoniae 232 [AE017332]
294819
294904
+
Leu
TAA
[Ensembl]
¡û
>C013597
AE017244
Mycoplasmatota
Mesomycoplasma hyopneumoniae 7448 [AE017244]
154500
154415
-
Leu
TAA
[Ensembl]
¡û
>C013627
AE017243
Mycoplasmatota
Mesomycoplasma hyopneumoniae J [AE017243]
147220
147135
-
Leu
TAA
[Ensembl]
¡û
>W141004160
AFCG01000005
Mycoplasmatota
Mesomycoplasma flocculare ATCC 27716 [AFCG]
35405
35320
-
Leu
TAA
[ENA]
¡û
>PL191001794
LR214993
Tenericutes
Mycoplasma hyopneumoniae NCTC10127 plasmid:2 (LR214993)
202040
202125
+
Leu
TAA
[ENA]
¡û
>C181071537
CP022714
Mycoplasmatota
Mesomycoplasma hyopneumoniae KM014 [CP022714]
385344
385259
-
Leu
TAA
-
¡û
>C181096437
CP024161
Mycoplasmatota
Mesomycoplasma dispar GS01 [CP024161]
893692
893777
+
Leu
TAA
-
¡û
>C191161531
CP038641
Mycoplasmatota
Mesomycoplasma hyopneumoniae ES-2 [CP038641]
152790
152705
-
Leu
TAA
-
¡û
>C191218216
LR214971
Mycoplasmatota
Mesomycoplasma dispar NCTC10125 [LR214971]
919316
919401
+
Leu
TAA
-
¡û
>C151019146
CP007229
Mycoplasmatota
Mesomycoplasma dispar ATCC 27140 [CP007229]
919159
919244
+
Leu
TAA
[Ensembl]
¡û
>C151029062
CP007585
Mycoplasmatota
Mesomycoplasma flocculare ATCC 27399 Ms42 [CP007585]
133410
133325
-
Leu
TAA
[Ensembl]
¡û
>W1510472737
CQIE01000255
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 CH43 [CQIE]
1093
1008
-
Leu
TAA
[ENA]
¡û
>C11114468
CP002274
Mycoplasmatota
Mesomycoplasma hyopneumoniae 168 [CP002274]
208773
208858
+
Leu
TAA
[Ensembl]
¡û
>C131002141
CP003131
Mycoplasmatota
Mesomycoplasma hyopneumoniae 168-L [CP003131]
208728
208813
+
Leu
TAA
[Ensembl]
¡û
>C131007172
CP003802
Mycoplasmatota
Mesomycoplasma hyopneumoniae 7422 [CP003802]
173492
173407
-
Leu
TAA
[Ensembl]
¡û
Identical group No.160103 (2 seq.)
>PL191001852
LR215032
Tenericutes
Mycoplasma gallopavonis NCTC10186 plasmid:2 (LR215032)
335902
335987
+
Leu
TAA
[ENA]
¡û
>W1911768457
QXGN01000009
Mycoplasmatota
Mycoplasmopsis gallopavonis WR1 [QXGN]
20704
20789
+
Leu
TAA
[ENA]
¡û
Identical group No.162686 (3 seq.)
>PL191001789
LR214986
Tenericutes
Mycoplasma cynos NCTC10142 plasmid:13 (LR214986)
108580
108495
-
Leu
TAA
[ENA]
¡û
>W141732371
JNKA01000006
Mycoplasmatota
Mycoplasmopsis felis ATCC 23391 [JNKA]
32229
32314
+
Leu
TAA
[ENA]
¡û
>C151099855
HF559394
Mycoplasmatota
Mycoplasmopsis cynos C142 [HF559394]
99155
99070
-
Leu
TAA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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