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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tenericutes
Anticodon = TAC
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.463007 (8 seq.)
>PL191001840
LR215004
Tenericutes
Mycoplasma conjunctivae NCTC10147 plasmid:8 (LR215004)
112809
112884
+
Val
TAC
[ENA]
¡û
>C191218144
LR214955
Mycoplasmatota
Mycoplasmopsis fermentans NCTC10117 [LR214955, LR214962]
486035
486110
+
Val
TAC
-
¡û
>W141701754
JMKY01000001
Mycoplasmatota
Mycoplasmopsis lipofaciens ATCC 35015 [JMKY]
47515
47590
+
Val
TAC
[ENA]
¡û
>W1910002629
ATFG01000014
Mycoplasmatota
Mycoplasmopsis fermentans MF-I1 [ATFG]
46692
46767
+
Val
TAC
[ENA]
¡û
>W1910002664
ATFH01000012
Mycoplasmatota
Mycoplasmopsis fermentans MF-I2 [ATFH]
40258
40333
+
Val
TAC
[ENA]
¡û
>C09107656
AP009608
Mycoplasmatota
Mycoplasmopsis fermentans PG18 [AP009608]
399168
399243
+
Val
TAC
[Ensembl]
¡û
>C11114236
CP001995
Mycoplasmatota
Mycoplasmopsis fermentans JER [CP001995]
309164
309239
+
Val
TAC
[Ensembl]
¡û
>C11114271
CP002458
Mycoplasmatota
Mycoplasmopsis fermentans M64 [CP002458]
343314
343389
+
Val
TAC
[Ensembl]
¡û
Identical group No.481065 (15 seq.)
>W1711799343
MWWN01000002
Mycoplasmatota
Mesomycoplasma hyopneumoniae [MWWN]
17114
17039
-
Val
TAC
[ENA]
¡û
>W1711942850
NBBN01000052
Mycoplasmatota
Mesomycoplasma hyopneumoniae [NBBN]
257
182
-
Val
TAC
[ENA]
¡û
>C013575
AE017332
Mycoplasmatota
Mesomycoplasma hyopneumoniae 232 [AE017332]
119761
119686
-
Val
TAC
[Ensembl]
¡û
>C013581
AE017244
Mycoplasmatota
Mesomycoplasma hyopneumoniae 7448 [AE017244]
335624
335699
+
Val
TAC
[Ensembl]
¡û
>C013611
AE017243
Mycoplasmatota
Mesomycoplasma hyopneumoniae J [AE017243]
322090
322165
+
Val
TAC
[Ensembl]
¡û
>PL191001808
LR214993
Tenericutes
Mycoplasma hyopneumoniae NCTC10127 plasmid:2 (LR214993)
26968
26893
-
Val
TAC
[ENA]
¡û
>C181071525
CP022714
Mycoplasmatota
Mesomycoplasma hyopneumoniae KM014 [CP022714]
560257
560332
+
Val
TAC
-
¡û
>C181096458
CP024161
Mycoplasmatota
Mesomycoplasma dispar GS01 [CP024161]
350291
350216
-
Val
TAC
-
¡û
>C191161515
CP038641
Mycoplasmatota
Mesomycoplasma hyopneumoniae ES-2 [CP038641]
334535
334610
+
Val
TAC
-
¡û
>C191218237
LR214971
Mycoplasmatota
Mesomycoplasma dispar NCTC10125 [LR214971]
355347
355272
-
Val
TAC
-
¡û
>C151019167
CP007229
Mycoplasmatota
Mesomycoplasma dispar ATCC 27140 [CP007229]
355344
355269
-
Val
TAC
[Ensembl]
¡û
>W1510472753
CQIE01000634
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 CH43 [CQIE]
222
147
-
Val
TAC
[ENA]
¡û
>C11114472
CP002274
Mycoplasmatota
Mesomycoplasma hyopneumoniae 168 [CP002274]
350747
350822
+
Val
TAC
[Ensembl]
¡û
>C131002145
CP003131
Mycoplasmatota
Mesomycoplasma hyopneumoniae 168-L [CP003131]
350852
350927
+
Val
TAC
[Ensembl]
¡û
>C131007156
CP003802
Mycoplasmatota
Mesomycoplasma hyopneumoniae 7422 [CP003802]
348484
348559
+
Val
TAC
[Ensembl]
¡û
Identical group No.491366 (5 seq.)
>PL191001857
LR215032
Tenericutes
Mycoplasma gallopavonis NCTC10186 plasmid:2 (LR215032)
334754
334679
-
Val
TAC
[ENA]
¡û
>C191218442
LR215024
Mycoplasmatota
Mycoplasmopsis glycophila NCTC10194 [LR215024]
226773
226848
+
Val
TAC
-
¡û
>W141561114
JHYE01000005
Mycoplasmatota
Mycoplasmopsis glycophila ATCC 35277 [JHYE]
51126
51051
-
Val
TAC
[ENA]
¡û
>W141807442
JPOK01000005
Mycoplasmatota
Mycoplasma buteonis [JPOK]
102358
102433
+
Val
TAC
[ENA]
¡û
>W1911768461
QXGN01000009
Mycoplasmatota
Mycoplasmopsis gallopavonis WR1 [QXGN]
19556
19481
-
Val
TAC
[ENA]
¡û
Identical group No.495391 (7 seq.)
>WENV180735247
ODGZ01113639
[ODGZ] human metagenome; G_DNA_Supragingival plaque
255
180
-
Val
TAC
[ENA]
¢þ
>WENV180751627
ODHS01089819
[ODHS] human metagenome; G_DNA_Supragingival plaque
252
327
+
Val
TAC
[ENA]
¢þ
>WENV180788783
ODIS01117398
[ODIS] human metagenome; G_DNA_Supragingival plaque
546
471
-
Val
TAC
[ENA]
¢þ
>WENV181077506
OEAP01064431
[OEAP] human metagenome; G_DNA_Supragingival plaque
467
542
+
Val
TAC
[ENA]
¢þ
>WENV181178988
OEJT01000876
[OEJT] human metagenome; G_DNA_Supragingival plaque
16927
16852
-
Val
TAC
[ENA]
¢þ
>W141170976
AXZE01000010
Mycoplasmatota
Metamycoplasma salivarium ATCC 23064 [AXZE]
129284
129359
+
Val
TAC
[ENA]
¡û
>PL191001700
LR214939
Tenericutes
Mycoplasma salivarium NCTC10113 plasmid:2 (LR214939)
188916
188841
-
Val
TAC
[ENA]
¡û
Identical group No.508241 (5 seq.)
>PL191001780
LR214986
Tenericutes
Mycoplasma cynos NCTC10142 plasmid:13 (LR214986)
855795
855720
-
Val
TAC
[ENA]
¡û
>C191183011
CP040825
Mycoplasmatota
Mycoplasma nasistruthionis 2F1A [CP040825]
406053
405978
-
Val
TAC
-
¡û
>C151099846
HF559394
Mycoplasmatota
Mycoplasmopsis cynos C142 [HF559394]
863141
863066
-
Val
TAC
[Ensembl]
¡û
>W121060564
AJFT01000004
Mycoplasmatota
Mycoplasmopsis canis UFG1 [AJFT]
18321
18246
-
Val
TAC
[ENA]
¡û
>W1710601353
FUXF01000027
Mycoplasmatota
Mycoplasmopsis verecunda verecundum [FUXF]
1754
1829
+
Val
TAC
[ENA]
¡û
Identical group No.527817 (6 seq.)
>C171051518
CP016817
Mycoplasmatota
Mesomycoplasma hyorhinis MDBK-IPV [CP016817]
659108
659033
-
Val
TAC
-
¡û
>PL191001725
LR214949
Tenericutes
Mycoplasma hyorhinis NCTC10121 plasmid:3 (LR214949)
665329
665254
-
Val
TAC
[ENA]
¡û
>C141009330
CP006849
Mycoplasmatota
Mesomycoplasma hyorhinis DBS 1050 [CP006849]
659195
659120
-
Val
TAC
[Ensembl]
¡û
>W1510643874
CVNB01000014
Chlamydiota
Chlamydia trachomatis LGV98 [CVNB]
18566
18641
+
Val
TAC
[ENA]
¡û
>C11114501
CP002669
Mycoplasmatota
Mesomycoplasma hyorhinis MCLD [CP002669]
653563
653638
+
Val
TAC
[Ensembl]
¡û
>C121009157
CP003231
Mycoplasmatota
Mesomycoplasma hyorhinis GDL-1 [CP003231]
659212
659137
-
Val
TAC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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