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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tenericutes
Anticodon = TCA
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271052 (39 seq.)
>W131182355
ARQH01000031
Mycoplasmatota
Mycoplasmopsis synoviae ATCC 25204 [ARQH]
5309
5383
+
SeC
TCA
[ENA]
¡û
>W131221271
AUAH01000009
Mycoplasmatota
Mycoplasmopsis arginini ATCC 23838 [AUAH]
27356
27282
-
SeC
TCA
[ENA]
¡û
>C171068157
CP017813
Mycoplasmatota
Mycoplasmopsis pullorum B359_6 [CP017813]
527644
527570
-
SeC
TCA
-
¡û
>W141280439
JAHB01000010
Mycoplasmatota
Mycoplasmopsis cricetuli ATCC 35279 [JAHB]
30741
30667
-
SeC
TCA
[ENA]
¡û
>W141280447
JAHB01000017
Mycoplasmatota
Mycoplasmopsis cricetuli ATCC 35279 [JAHB]
12538
12612
+
SeC
TCA
[ENA]
¡û
>PL191001776
LR214986
Tenericutes
Mycoplasma cynos NCTC10142 plasmid:13 (LR214986)
813597
813671
+
Sec
TCA
[ENA]
¡û
>C181093497
CP024049
Mycoplasmatota
Mycoplasmopsis bovirhinis GS01 [CP024049]
708672
708746
+
Sup
TCA
-
¡û
>C181188659
CP030141
Mycoplasmatota
Mycoplasmopsis anatis NCTC 10156 [CP030141]
687914
687840
-
Sup
TCA
-
¡û
>C191001016
AP018135
Mycoplasmatota
Mycoplasmopsis bovirhinis HAZ141_2 [AP018135]
83497
83571
+
Sec
TCA
-
¡û
>C191183007
CP040825
Mycoplasmatota
Mycoplasma nasistruthionis 2F1A [CP040825]
549949
549875
-
Sec
TCA
-
¡û
>C191218090
LR214950
Mycoplasmatota
Mycoplasmopsis gallinacea NCTC10183 [LR214950]
708701
708627
-
Sec
TCA
-
¡û
>C191218350
LR215010
Mycoplasmatota
Mycoplasmopsis canis NCTC10146 [LR215010]
708229
708303
+
Sec
TCA
-
¡û
>C191218455
LR215024
Mycoplasmatota
Mycoplasmopsis glycophila NCTC10194 [LR215024]
650475
650401
-
Sec
TCA
-
¡û
>C191218496
LR215031
Mycoplasmatota
Mycoplasmopsis gallopavonis NCTC10186 [LR215031]
362690
362764
+
Sec
TCA
-
¡û
>C191218521
LR215035
Mycoplasmatota
Mycoplasmopsis anatis NCTC10156 [LR215035]
857156
857230
+
Sec
TCA
-
¡û
>C191218560
LR215036
Mycoplasmatota
Mycoplasmopsis citelli NCTC10181 [LR215036]
1058941
1058867
-
Sec
TCA
-
¡û
>C191218634
LR215039
Mycoplasmatota
Mycoplasmopsis columboralis NCTC10179 [LR215039]
382715
382641
-
Sec
TCA
-
¡û
>C191224833
LS991951
Mycoplasmatota
Mycoplasmopsis edwardii NCTC10132 [LS991951]
151672
151598
-
Sec
TCA
-
¡û
>C191224898
LS991953
Mycoplasmatota
Mycoplasmopsis synoviae NCTC10124 [LS991953]
65876
65802
-
Sec
TCA
-
¡û
>W141561120
JHYE01000011
Mycoplasmatota
Mycoplasmopsis glycophila ATCC 35277 [JHYE]
4323
4397
+
SeC
TCA
[ENA]
¡û
>W141731313
JNIZ01000003
Mycoplasmatota
Mycoplasmopsis sturni DSM 22021 [JNIZ]
95656
95582
-
SeC
TCA
[ENA]
¡û
>W141732340
JNJZ01000001
Mycoplasmatota
Mycoplasmopsis columboralis ATCC 29258 [JNJZ]
99475
99549
+
SeC
TCA
[ENA]
¡û
>W141732367
JNKA01000004
Mycoplasmatota
Mycoplasmopsis felis ATCC 23391 [JNKA]
16658
16732
+
SeC
TCA
[ENA]
¡û
>W141807428
JPOK01000004
Mycoplasmatota
Mycoplasma buteonis [JPOK]
169968
170042
+
SeC
TCA
[ENA]
¡û
>W1911768448
QXGN01000007
Mycoplasmatota
Mycoplasmopsis gallopavonis WR1 [QXGN]
14507
14433
-
Sec
TCA
[ENA]
¡û
>C151075552
CP011021
Mycoplasmatota
Mycoplasmopsis gallinacea B2096 8B [CP011021]
661671
661597
-
SeC
TCA
[Ensembl]
¡û
>C151076529
CP011096
Mycoplasmatota
Mycoplasmopsis synoviae ATCC 25204 WVU1853 [CP011096]
65933
65859
-
SeC
TCA
[Ensembl]
¡û
>C151081628
CP011368
Mycoplasmatota
Mycoplasmopsis canis LV [CP011368]
739944
740018
+
SeC
TCA
[Ensembl]
¡û
>W10116161
ADNC01000027
Mycoplasmatota
Mycoplasmopsis alligatoris A21JP2 [ADNC]
213741
213667
-
SeC
TCA
[ENA]
¡û
>C10109271
CP001991
Mycoplasmatota
Mycoplasma crocodyli MP145 [CP001991]
796349
796423
+
SeC
TCA
[Ensembl]
¡û
>W11120695
ADNC01000027
Mycoplasmatota
Mycoplasmopsis alligatoris A21JP2 [ADNC]
213741
213667
-
SeC
TCA
[ENA]
¡û
>W11174745
AFVJ01000036
Mycoplasmatota
Mycoplasmopsis anatis 1340 [AFVJ]
18236
18310
+
SeC
TCA
[ENA]
¡û
>C161070540
CP014281
Mycoplasmatota
Mycoplasmopsis canis PG 14 [CP014281]
707514
707588
+
SeC
TCA
-
¡û
>W121060477
AJFQ01000006
Mycoplasmatota
Mycoplasmopsis canis PG 14 [AJFQ]
160168
160094
-
SeC
TCA
[ENA]
¡û
>W121060508
AJFR01000005
Mycoplasmatota
Mycoplasmopsis canis UF31 [AJFR]
160149
160075
-
SeC
TCA
[ENA]
¡û
>W121060539
AJFS01000005
Mycoplasmatota
Mycoplasmopsis canis UF33 [AJFS]
160173
160099
-
SeC
TCA
[ENA]
¡û
>W121060570
AJFT01000005
Mycoplasmatota
Mycoplasmopsis canis UFG1 [AJFT]
160185
160111
-
SeC
TCA
[ENA]
¡û
>W121060601
AJFU01000006
Mycoplasmatota
Mycoplasmopsis canis UFG4 [AJFU]
160174
160100
-
SeC
TCA
[ENA]
¡û
>W1710601338
FUXF01000004
Mycoplasmatota
Mycoplasmopsis verecunda verecundum [FUXF]
46120
46046
-
SeC
TCA
[ENA]
¡û
Identical group No.276144 (25 seq.)
>W1711799326
MWWN01000002
Mycoplasmatota
Mesomycoplasma hyopneumoniae [MWWN]
160789
160863
+
SeC
TCA
[ENA]
¡û
>W1711942852
NBBN01000082
Mycoplasmatota
Mesomycoplasma hyopneumoniae [NBBN]
2980
3054
+
SeC
TCA
[ENA]
¡û
>W141283045
JAKV01000001
Mycoplasmatota
Mesomycoplasma ovipneumoniae NM2010 [JAKV]
540797
540723
-
SeC
TCA
[ENA]
¡û
>W141450913
JFAD01000036
Mycoplasmatota
Mesomycoplasma ovipneumoniae 14811 [JFAD]
8063
7989
-
SeC
TCA
[ENA]
¡û
>PL191001791
LR214993
Tenericutes
Mycoplasma hyopneumoniae NCTC10127 plasmid:2 (LR214993)
170767
170841
+
Sec
TCA
[ENA]
¡û
>C181071534
CP022714
Mycoplasmatota
Mesomycoplasma hyopneumoniae KM014 [CP022714]
416627
416553
-
Sup
TCA
-
¡û
>C181096461
CP024161
Mycoplasmatota
Mesomycoplasma dispar GS01 [CP024161]
253431
253357
-
Sup
TCA
-
¡û
>C191161528
CP038641
Mycoplasmatota
Mesomycoplasma hyopneumoniae ES-2 [CP038641]
184070
183996
-
Sec
TCA
-
¡û
>C191218240
LR214971
Mycoplasmatota
Mesomycoplasma dispar NCTC10125 [LR214971]
259583
259509
-
Sec
TCA
-
¡û
>C191218483
LR215028
Mycoplasmatota
Mesomycoplasma ovipneumoniae NCTC10151 [LR215025, LR215028]
303666
303592
-
Sec
TCA
-
¡û
>W1910000237
AGRE01000016
Mycoplasmatota
Mesomycoplasma ovipneumoniae ATCC 29419 [AGRE]
6549
6623
+
Sec
TCA
[ENA]
¡û
>W1910000268
AJQV01000016
Mycoplasmatota
Mycoplasma mycoides subsp. capri str. G1201 [AJQV]
6549
6623
+
Sec
TCA
[ENA]
¡û
>W1910573337
JOTL01000094
Mycoplasmatota
Mesomycoplasma ovipneumoniae ATCC 29419 Y98 [JOTL]
216
142
-
Sec
TCA
[ENA]
¡û
>C151019170
CP007229
Mycoplasmatota
Mesomycoplasma dispar ATCC 27140 [CP007229]
259580
259506
-
SeC
TCA
[Ensembl]
¡û
>C11114465
CP002274
Mycoplasmatota
Mesomycoplasma hyopneumoniae 168 [CP002274]
177502
177576
+
Trp
TCA
[Ensembl]
¡û
>W11163124
AFHO01000008
Mycoplasmatota
Mesomycoplasma ovipneumoniae SC01 [AFHO]
86534
86460
-
SeC
TCA
[ENA]
¡û
>C131002138
CP003131
Mycoplasmatota
Mesomycoplasma hyopneumoniae 168-L [CP003131]
177459
177533
+
SeC
TCA
[Ensembl]
¡û
>C131007169
CP003802
Mycoplasmatota
Mesomycoplasma hyopneumoniae 7422 [CP003802]
204778
204704
-
SeC
TCA
[Ensembl]
¡û
>W1710624977
JOTE01000007
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTE]
22818
22892
+
SeC
TCA
[ENA]
¡û
>W1710625030
JOTF01000060
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTF]
192
118
-
SeC
TCA
[ENA]
¡û
>W1710625054
JOTG01000047
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTG]
5972
6046
+
SeC
TCA
[ENA]
¡û
>W1710625090
JOTH01000040
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTH]
5895
5969
+
SeC
TCA
[ENA]
¡û
>W1710625120
JOTI01000093
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTI]
5700
5774
+
SeC
TCA
[ENA]
¡û
>W1710625147
JOTJ01000067
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTJ]
4875
4949
+
SeC
TCA
[ENA]
¡û
>W1710625173
JOTK01000067
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTK]
238
164
-
SeC
TCA
[ENA]
¡û
Identical group No.281123 (9 seq.)
>PL191001744
LR214957
Tenericutes
Mycoplasma fermentans NCTC10117 plasmid:3 (LR214957)
10565
10491
-
Sec
TCA
[ENA]
¡û
>PL191001831
LR215003
Tenericutes
Mycoplasma conjunctivae NCTC10147 plasmid:7 (LR215003)
220144
220070
-
Sec
TCA
[ENA]
¡û
>PL191001846
LR215006
Tenericutes
Mycoplasma conjunctivae NCTC10147 plasmid:10 (LR215006)
11416
11490
+
Sec
TCA
[ENA]
¡û
>C191218134
LR214955
Mycoplasmatota
Mycoplasmopsis fermentans NCTC10117 [LR214955, LR214962]
27293
27367
+
Sec
TCA
-
¡û
>W1910002648
ATFG01000043
Mycoplasmatota
Mycoplasmopsis fermentans MF-I1 [ATFG]
34868
34942
+
Sec
TCA
[ENA]
¡û
>W1910002683
ATFH01000038
Mycoplasmatota
Mycoplasmopsis fermentans MF-I2 [ATFH]
7467
7541
+
Sec
TCA
[ENA]
¡û
>C09107667
AP009608
Mycoplasmatota
Mycoplasmopsis fermentans PG18 [AP009608]
878248
878174
-
SeC
TCA
[Ensembl]
¡û
>C11114240
CP001995
Mycoplasmatota
Mycoplasmopsis fermentans JER [CP001995]
860664
860738
+
Trp
TCA
[Ensembl]
¡û
>C11114275
CP002458
Mycoplasmatota
Mycoplasmopsis fermentans M64 [CP002458]
1003531
1003605
+
Trp
TCA
[Ensembl]
¡û
Identical group No.282203 (11 seq.)
>W131185104
ARTL01000025
Mycoplasmatota
Mesomycoplasma hyorhinis ATCC 17981 [ARTL]
16151
16225
+
SeC
TCA
[ENA]
¡û
>C171051509
CP016817
Mycoplasmatota
Mesomycoplasma hyorhinis MDBK-IPV [CP016817]
325904
325978
+
SeC
TCA
-
¡û
>PL191001716
LR214949
Tenericutes
Mycoplasma hyorhinis NCTC10121 plasmid:3 (LR214949)
329401
329475
+
Sec
TCA
[ENA]
¡û
>C191218288
LR214997
Mycoplasmatota
Mesomycoplasma conjunctivae NCTC10147 [LR214997]
381525
381599
+
Sec
TCA
-
¡û
>C191224806
LS991950
Mycoplasmatota
Mesomycoplasma hyorhinis NCTC10130 [LS991950]
420980
420906
-
Sec
TCA
-
¡û
>C141009321
CP006849
Mycoplasmatota
Mesomycoplasma hyorhinis DBS 1050 [CP006849]
326031
326105
+
SeC
TCA
[Ensembl]
¡û
>C10109462
CP002170
Mycoplasmatota
Mesomycoplasma hyorhinis HUB-1 [CP002170]
417996
417922
-
SeC
TCA
[Ensembl]
¡û
>C11114494
CP002669
Mycoplasmatota
Mesomycoplasma hyorhinis MCLD [CP002669]
58740
58814
+
Trp
TCA
[Ensembl]
¡û
>W1510643886
CVNB01000016
Chlamydiota
Chlamydia trachomatis LGV98 [CVNB]
14481
14555
+
SeC
TCA
[ENA]
¡û
>C121009148
CP003231
Mycoplasmatota
Mesomycoplasma hyorhinis GDL-1 [CP003231]
326031
326105
+
SeC
TCA
[Ensembl]
¡û
>C131009729
CP003914
Mycoplasmatota
Mesomycoplasma hyorhinis SK76 [CP003914]
419195
419121
-
SeC
TCA
[Ensembl]
¡û
Identical group No.311172 (16 seq.)
>WENV180788894
ODIS01145983
[ODIS] human metagenome; G_DNA_Supragingival plaque
125
51
-
Sup
TCA
[ENA]
¢þ
>WENV180808993
ODJK01002666
[ODJK] human metagenome; G_DNA_Subgingival plaque
2439
2513
+
Sup
TCA
[ENA]
¢þ
>WENV180950575
ODUH01000190
[ODUH] human metagenome; G_DNA_Subgingival plaque
12714
12640
-
Sup
TCA
[ENA]
¢þ
>WENV180976222
ODUY01061285
[ODUY] human metagenome; G_DNA_Supragingival plaque
771
697
-
Sup
TCA
[ENA]
¢þ
>WENV181077448
OEAP01060064
[OEAP] human metagenome; G_DNA_Supragingival plaque
652
578
-
Sup
TCA
[ENA]
¢þ
>WENV181080310
OEAS01039369
[OEAS] human metagenome; G_DNA_Supragingival plaque
165
91
-
Sup
TCA
[ENA]
¢þ
>WENV181178837
OEJT01000346
[OEJT] human metagenome; G_DNA_Supragingival plaque
15002
15076
+
Sup
TCA
[ENA]
¢þ
>W141170957
AXZE01000009
Mycoplasmatota
Metamycoplasma salivarium ATCC 23064 [AXZE]
204451
204525
+
SeC
TCA
[ENA]
¡û
>W141464159
JFKG01000030
Mycoplasmatota
Metamycoplasma hyosynoviae [JFKG]
38397
38323
-
SeC
TCA
[ENA]
¡û
>W141464171
JFKH01000021
Mycoplasmatota
Metamycoplasma hyosynoviae [JFKH]
15574
15648
+
SeC
TCA
[ENA]
¡û
>W141464197
JFKI01000002
Mycoplasmatota
Metamycoplasma hyosynoviae [JFKI]
15747
15821
+
SeC
TCA
[ENA]
¡û
>W141464251
JFKJ01000043
Mycoplasmatota
Metamycoplasma hyosynoviae [JFKJ]
39504
39430
-
SeC
TCA
[ENA]
¡û
>W141464262
JFKK01000001
Mycoplasmatota
Metamycoplasma hyosynoviae [JFKK]
10569
10643
+
SeC
TCA
[ENA]
¡û
>W141464334
JFKM01000005
Mycoplasmatota
Metamycoplasma hyosynoviae [JFKM]
19799
19873
+
SeC
TCA
[ENA]
¡û
>PL191001681
LR214939
Tenericutes
Mycoplasma salivarium NCTC10113 plasmid:2 (LR214939)
80518
80592
+
Sec
TCA
[ENA]
¡û
>C191008264
CP008748
Mycoplasmatota
Metamycoplasma hyosynoviae M60 [CP008748]
675407
675481
+
Sec
TCA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK