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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tenericutes
Anticodon = TCG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.463010 (7 seq.)
>PL191001753
LR214963
Tenericutes
Mycoplasma fermentans NCTC10117 plasmid:9 (LR214963)
201522
201597
+
Arg
TCG
[ENA]
¡û
>PL191001829
LR215003
Tenericutes
Mycoplasma conjunctivae NCTC10147 plasmid:7 (LR215003)
305696
305621
-
Arg
TCG
[ENA]
¡û
>W1910002641
ATFG01000030
Mycoplasmatota
Mycoplasmopsis fermentans MF-I1 [ATFG]
139974
139899
-
Arg
TCG
[ENA]
¡û
>W1910002676
ATFH01000026
Mycoplasmatota
Mycoplasmopsis fermentans MF-I2 [ATFH]
80138
80063
-
Arg
TCG
[ENA]
¡û
>C09107684
AP009608
Mycoplasmatota
Mycoplasmopsis fermentans PG18 [AP009608]
73268
73193
-
Arg
TCG
[Ensembl]
¡û
>C11114256
CP001995
Mycoplasmatota
Mycoplasmopsis fermentans JER [CP001995]
615739
615664
-
Arg
TCG
[Ensembl]
¡û
>C11114291
CP002458
Mycoplasmatota
Mycoplasmopsis fermentans M64 [CP002458]
692540
692465
-
Arg
TCG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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