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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tenericutes
Anticodon = TCT
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.276146 (22 seq.)
>W1711799331
MWWN01000002
Mycoplasmatota
Mesomycoplasma hyopneumoniae [MWWN]
234543
234619
+
Arg
TCT
[ENA]
¡û
>C013553
AE017332
Mycoplasmatota
Mesomycoplasma hyopneumoniae 232 [AE017332]
337236
337312
+
Arg
TCT
[Ensembl]
¡û
>C013629
AE017243
Mycoplasmatota
Mesomycoplasma hyopneumoniae J [AE017243]
104816
104740
-
Arg
TCT
[Ensembl]
¡û
>W141004162
AFCG01000005
Mycoplasmatota
Mesomycoplasma flocculare ATCC 27716 [AFCG]
999
923
-
Arg
TCT
[ENA]
¡û
>W141283048
JAKV01000001
Mycoplasmatota
Mesomycoplasma ovipneumoniae NM2010 [JAKV]
352506
352430
-
Arg
TCT
[ENA]
¡û
>W141450900
JFAD01000029
Mycoplasmatota
Mesomycoplasma ovipneumoniae 14811 [JFAD]
6641
6565
-
Arg
TCT
[ENA]
¡û
>PL191001796
LR214993
Tenericutes
Mycoplasma hyopneumoniae NCTC10127 plasmid:2 (LR214993)
244457
244533
+
Arg
TCT
[ENA]
¡û
>C181071539
CP022714
Mycoplasmatota
Mesomycoplasma hyopneumoniae KM014 [CP022714]
348176
348100
-
Arg
TCT
-
¡û
>C191161533
CP038641
Mycoplasmatota
Mesomycoplasma hyopneumoniae ES-2 [CP038641]
110286
110210
-
Arg
TCT
-
¡û
>C191218486
LR215028
Mycoplasmatota
Mesomycoplasma ovipneumoniae NCTC10151 [LR215025, LR215028]
102831
102755
-
Arg
TCT
-
¡û
>W1910000245
AGRE01000072
Mycoplasmatota
Mesomycoplasma ovipneumoniae ATCC 29419 [AGRE]
5091
5015
-
Arg
TCT
[ENA]
¡û
>W1910000276
AJQV01000072
Mycoplasmatota
Mycoplasma mycoides subsp. capri str. G1201 [AJQV]
5091
5015
-
Arg
TCT
[ENA]
¡û
>W1910573338
JOTL01000096
Mycoplasmatota
Mesomycoplasma ovipneumoniae ATCC 29419 Y98 [JOTL]
2144
2220
+
Arg
TCT
[ENA]
¡û
>C151029064
CP007585
Mycoplasmatota
Mesomycoplasma flocculare ATCC 27399 Ms42 [CP007585]
99008
98932
-
Arg
TCT
[Ensembl]
¡û
>W11163131
AFHO01000012
Mycoplasmatota
Mesomycoplasma ovipneumoniae SC01 [AFHO]
55338
55262
-
Arg
TCT
[ENA]
¡û
>W1710624991
JOTE01000025
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTE]
17870
17794
-
Arg
TCT
[ENA]
¡û
>W1710625018
JOTF01000022
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTF]
5107
5031
-
Arg
TCT
[ENA]
¡û
>W1710625040
JOTG01000013
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTG]
1783
1859
+
Arg
TCT
[ENA]
¡û
>W1710625065
JOTH01000004
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTH]
36992
37068
+
Arg
TCT
[ENA]
¡û
>W1710625101
JOTI01000036
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTI]
19299
19375
+
Arg
TCT
[ENA]
¡û
>W1710625127
JOTJ01000024
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTJ]
5155
5079
-
Arg
TCT
[ENA]
¡û
>W1710625161
JOTK01000041
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTK]
5140
5064
-
Arg
TCT
[ENA]
¡û
Identical group No.281391 (7 seq.)
>PL191001812
LR215003
Tenericutes
Mycoplasma conjunctivae NCTC10147 plasmid:7 (LR215003)
81419
81495
+
Arg
TCT
[ENA]
¡û
>C191218149
LR214955
Mycoplasmatota
Mycoplasmopsis fermentans NCTC10117 [LR214955, LR214962]
164609
164533
-
Arg
TCT
-
¡û
>W1910002620
ATFG01000001
Mycoplasmatota
Mycoplasmopsis fermentans MF-I1 [ATFG]
10144
10068
-
Arg
TCT
[ENA]
¡û
>W1910002655
ATFH01000003
Mycoplasmatota
Mycoplasmopsis fermentans MF-I2 [ATFH]
2936
2860
-
Arg
TCT
[ENA]
¡û
>C09107663
AP009608
Mycoplasmatota
Mycoplasmopsis fermentans PG18 [AP009608]
740933
741009
+
Arg
TCT
[Ensembl]
¡û
>C11114261
CP001995
Mycoplasmatota
Mycoplasmopsis fermentans JER [CP001995]
22062
21986
-
Arg
TCT
[Ensembl]
¡û
>C11114296
CP002458
Mycoplasmatota
Mycoplasmopsis fermentans M64 [CP002458]
22096
22020
-
Arg
TCT
[Ensembl]
¡û
Identical group No.282470 (9 seq.)
>C171051510
CP016817
Mycoplasmatota
Mesomycoplasma hyorhinis MDBK-IPV [CP016817]
355958
356034
+
Arg
TCT
-
¡û
>W131185105
ARTL01000025
Mycoplasmatota
Mesomycoplasma hyorhinis ATCC 17981 [ARTL]
46209
46285
+
Arg
TCT
[ENA]
¡û
>PL191001717
LR214949
Tenericutes
Mycoplasma hyorhinis NCTC10121 plasmid:3 (LR214949)
359455
359531
+
Arg
TCT
[ENA]
¡û
>C191224807
LS991950
Mycoplasmatota
Mesomycoplasma hyorhinis NCTC10130 [LS991950]
390922
390846
-
Arg
TCT
-
¡û
>C141009322
CP006849
Mycoplasmatota
Mesomycoplasma hyorhinis DBS 1050 [CP006849]
356085
356161
+
Arg
TCT
[Ensembl]
¡û
>C10109463
CP002170
Mycoplasmatota
Mesomycoplasma hyorhinis HUB-1 [CP002170]
387943
387867
-
Arg
TCT
[Ensembl]
¡û
>C11114495
CP002669
Mycoplasmatota
Mesomycoplasma hyorhinis MCLD [CP002669]
88815
88891
+
Arg
TCT
[Ensembl]
¡û
>C121009149
CP003231
Mycoplasmatota
Mesomycoplasma hyorhinis GDL-1 [CP003231]
356085
356161
+
Arg
TCT
[Ensembl]
¡û
>C131009730
CP003914
Mycoplasmatota
Mesomycoplasma hyorhinis SK76 [CP003914]
389144
389068
-
Arg
TCT
[Ensembl]
¡û
Identical group No.322069 (12 seq.)
>C171068137
CP017813
Mycoplasmatota
Mycoplasmopsis pullorum B359_6 [CP017813]
484985
485061
+
Arg
TCT
-
¡û
>PL191001788
LR214986
Tenericutes
Mycoplasma cynos NCTC10142 plasmid:13 (LR214986)
153575
153499
-
Arg
TCT
[ENA]
¡û
>C181188655
CP030141
Mycoplasmatota
Mycoplasmopsis anatis NCTC 10156 [CP030141]
744035
744111
+
Arg
TCT
-
¡û
>C191218082
LR214950
Mycoplasmatota
Mycoplasmopsis gallinacea NCTC10183 [LR214950]
714913
714989
+
Arg
TCT
-
¡û
>C191218534
LR215035
Mycoplasmatota
Mycoplasmopsis anatis NCTC10156 [LR215035]
801035
800959
-
Arg
TCT
-
¡û
>C151075548
CP011021
Mycoplasmatota
Mycoplasmopsis gallinacea B2096 8B [CP011021]
666046
666122
+
Arg
TCT
[Ensembl]
¡û
>C151099854
HF559394
Mycoplasmatota
Mycoplasmopsis cynos C142 [HF559394]
147270
147194
-
Arg
TCT
[Ensembl]
¡û
>W10116139
ADNC01000007
Mycoplasmatota
Mycoplasmopsis alligatoris A21JP2 [ADNC]
134761
134837
+
Arg
TCT
[ENA]
¡û
>C10109285
CP001991
Mycoplasmatota
Mycoplasma crocodyli MP145 [CP001991]
98216
98140
-
Arg
TCT
[Ensembl]
¡û
>W11120673
ADNC01000007
Mycoplasmatota
Mycoplasmopsis alligatoris A21JP2 [ADNC]
134761
134837
+
Arg
TCT
[ENA]
¡û
>W11174741
AFVJ01000030
Mycoplasmatota
Mycoplasmopsis anatis 1340 [AFVJ]
26554
26630
+
Arg
TCT
[ENA]
¡û
>W1710601345
FUXF01000010
Mycoplasmatota
Mycoplasmopsis verecunda verecundum [FUXF]
12106
12182
+
Arg
TCT
[ENA]
¡û
Identical group No.516372 (16 seq.)
>WENV180809368
ODJK01014042
[ODJK] human metagenome; G_DNA_Subgingival plaque
1885
1810
-
Arg
TCT
[ENA]
¢þ
>WENV180951813
ODUH01059067
[ODUH] human metagenome; G_DNA_Subgingival plaque
396
471
+
Arg
TCT
[ENA]
¢þ
>WENV181077567
OEAP01074746
[OEAP] human metagenome; G_DNA_Supragingival plaque
162
87
-
Arg
TCT
[ENA]
¢þ
>WENV181079966
OEAS01020981
[OEAS] human metagenome; G_DNA_Supragingival plaque
2591
2666
+
Arg
TCT
[ENA]
¢þ
>WENV181178525
OEJT01000043
[OEJT] human metagenome; G_DNA_Supragingival plaque
73109
73034
-
Arg
TCT
[ENA]
¢þ
>W141170970
AXZE01000009
Mycoplasmatota
Metamycoplasma salivarium ATCC 23064 [AXZE]
60481
60406
-
Arg
TCT
[ENA]
¡û
>W141464148
JFKG01000017
Mycoplasmatota
Metamycoplasma hyosynoviae [JFKG]
21414
21339
-
Arg
TCT
[ENA]
¡û
>W141464179
JFKH01000022
Mycoplasmatota
Metamycoplasma hyosynoviae [JFKH]
39389
39314
-
Arg
TCT
[ENA]
¡û
>W141464226
JFKI01000044
Mycoplasmatota
Metamycoplasma hyosynoviae [JFKI]
6814
6889
+
Arg
TCT
[ENA]
¡û
>W141464232
JFKJ01000025
Mycoplasmatota
Metamycoplasma hyosynoviae [JFKJ]
27034
27109
+
Arg
TCT
[ENA]
¡û
>W141464272
JFKK01000004
Mycoplasmatota
Metamycoplasma hyosynoviae [JFKK]
2062
1987
-
Arg
TCT
[ENA]
¡û
>W141464315
JFKL01000040
Mycoplasmatota
Metamycoplasma hyosynoviae [JFKL]
6926
6851
-
Arg
TCT
[ENA]
¡û
>W141464340
JFKM01000006
Mycoplasmatota
Metamycoplasma hyosynoviae [JFKM]
6901
6976
+
Arg
TCT
[ENA]
¡û
>PL191001691
LR214939
Tenericutes
Mycoplasma salivarium NCTC10113 plasmid:2 (LR214939)
664895
664820
-
Arg
TCT
[ENA]
¡û
>C191008261
CP008748
Mycoplasmatota
Metamycoplasma hyosynoviae M60 [CP008748]
580190
580265
+
Arg
TCT
-
¡û
>W141557529
JHVF01000013
Mycoplasmatota
Metamycoplasma spumans ATCC 19526 [JHVF]
11654
11579
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK