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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tenericutes
Anticodon = TGA
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.12681 (7 seq.)
>PL191001749
LR214963
Tenericutes
Mycoplasma fermentans NCTC10117 plasmid:9 (LR214963)
200135
200227
+
Ser
TGA
[ENA]
¡û
>PL191001825
LR215003
Tenericutes
Mycoplasma conjunctivae NCTC10147 plasmid:7 (LR215003)
307083
306991
-
Ser
TGA
[ENA]
¡û
>W1910002637
ATFG01000030
Mycoplasmatota
Mycoplasmopsis fermentans MF-I1 [ATFG]
141365
141273
-
Ser
TGA
[ENA]
¡û
>W1910002672
ATFH01000026
Mycoplasmatota
Mycoplasmopsis fermentans MF-I2 [ATFH]
81529
81437
-
Ser
TGA
[ENA]
¡û
>C09107680
AP009608
Mycoplasmatota
Mycoplasmopsis fermentans PG18 [AP009608]
74655
74563
-
Ser
TGA
[Ensembl]
¡û
>C11114252
CP001995
Mycoplasmatota
Mycoplasmopsis fermentans JER [CP001995]
617130
617038
-
Ser
TGA
[Ensembl]
¡û
>C11114287
CP002458
Mycoplasmatota
Mycoplasmopsis fermentans M64 [CP002458]
693927
693835
-
Ser
TGA
[Ensembl]
¡û
Identical group No.14896 (3 seq.)
>PL191001766
LR214986
Tenericutes
Mycoplasma cynos NCTC10142 plasmid:13 (LR214986)
216989
217081
+
Ser
TGA
[ENA]
¡û
>C191224820
LS991951
Mycoplasmatota
Mycoplasmopsis edwardii NCTC10132 [LS991951]
169668
169760
+
Ser
TGA
-
¡û
>C151099832
HF559394
Mycoplasmatota
Mycoplasmopsis cynos C142 [HF559394]
211561
211653
+
Ser
TGA
[Ensembl]
¡û
Identical group No.30725 (31 seq.)
>W1711799336
MWWN01000002
Mycoplasmatota
Mesomycoplasma hyopneumoniae [MWWN]
235080
235170
+
Ser
TGA
[ENA]
¡û
>W1711942866
NBBN01000186
Mycoplasmatota
Mesomycoplasma hyopneumoniae [NBBN]
3925
3835
-
Ser
TGA
[ENA]
¡û
>C013558
AE017332
Mycoplasmatota
Mesomycoplasma hyopneumoniae 232 [AE017332]
337773
337863
+
Ser
TGA
[Ensembl]
¡û
>C013604
AE017244
Mycoplasmatota
Mesomycoplasma hyopneumoniae 7448 [AE017244]
111019
110929
-
Ser
TGA
[Ensembl]
¡û
>C013634
AE017243
Mycoplasmatota
Mesomycoplasma hyopneumoniae J [AE017243]
104282
104192
-
Ser
TGA
[Ensembl]
¡û
>W141004167
AFCG01000005
Mycoplasmatota
Mesomycoplasma flocculare ATCC 27716 [AFCG]
498
408
-
Ser
TGA
[ENA]
¡û
>W141283053
JAKV01000001
Mycoplasmatota
Mesomycoplasma ovipneumoniae NM2010 [JAKV]
352006
351916
-
Ser
TGA
[ENA]
¡û
>W141450905
JFAD01000029
Mycoplasmatota
Mesomycoplasma ovipneumoniae 14811 [JFAD]
6142
6052
-
Ser
TGA
[ENA]
¡û
>PL191001801
LR214993
Tenericutes
Mycoplasma hyopneumoniae NCTC10127 plasmid:2 (LR214993)
244994
245084
+
Ser
TGA
[ENA]
¡û
>C181071544
CP022714
Mycoplasmatota
Mesomycoplasma hyopneumoniae KM014 [CP022714]
347643
347553
-
Ser
TGA
-
¡û
>C181096447
CP024161
Mycoplasmatota
Mesomycoplasma dispar GS01 [CP024161]
953299
953209
-
Ser
TGA
-
¡û
>C191161538
CP038641
Mycoplasmatota
Mesomycoplasma hyopneumoniae ES-2 [CP038641]
109747
109657
-
Ser
TGA
-
¡û
>C191218226
LR214971
Mycoplasmatota
Mesomycoplasma dispar NCTC10125 [LR214971]
979229
979139
-
Ser
TGA
-
¡û
>C191218491
LR215028
Mycoplasmatota
Mesomycoplasma ovipneumoniae NCTC10151 [LR215025, LR215028]
102331
102241
-
Ser
TGA
-
¡û
>W1910000250
AGRE01000072
Mycoplasmatota
Mesomycoplasma ovipneumoniae ATCC 29419 [AGRE]
4588
4498
-
Ser
TGA
[ENA]
¡û
>W1910000281
AJQV01000072
Mycoplasmatota
Mycoplasma mycoides subsp. capri str. G1201 [AJQV]
4588
4498
-
Ser
TGA
[ENA]
¡û
>W1910573343
JOTL01000096
Mycoplasmatota
Mesomycoplasma ovipneumoniae ATCC 29419 Y98 [JOTL]
2647
2737
+
Ser
TGA
[ENA]
¡û
>C151019156
CP007229
Mycoplasmatota
Mesomycoplasma dispar ATCC 27140 [CP007229]
979069
978979
-
Ser
TGA
[Ensembl]
¡û
>C151029069
CP007585
Mycoplasmatota
Mesomycoplasma flocculare ATCC 27399 Ms42 [CP007585]
98507
98417
-
Ser
TGA
[Ensembl]
¡û
>W1510472744
CQIE01000258
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 CH43 [CQIE]
413
323
-
Ser
TGA
[ENA]
¡û
>C11114490
CP002274
Mycoplasmatota
Mesomycoplasma hyopneumoniae 168 [CP002274]
104199
104109
-
Ser
TGA
[Ensembl]
¡û
>W11163136
AFHO01000012
Mycoplasmatota
Mesomycoplasma ovipneumoniae SC01 [AFHO]
54840
54750
-
Ser
TGA
[ENA]
¡û
>C131002163
CP003131
Mycoplasmatota
Mesomycoplasma hyopneumoniae 168-L [CP003131]
104142
104052
-
Ser
TGA
[Ensembl]
¡û
>C131007179
CP003802
Mycoplasmatota
Mesomycoplasma hyopneumoniae 7422 [CP003802]
110914
110824
-
Ser
TGA
[Ensembl]
¡û
>W1710624996
JOTE01000025
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTE]
17372
17282
-
Ser
TGA
[ENA]
¡û
>W1710625023
JOTF01000022
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTF]
4607
4517
-
Ser
TGA
[ENA]
¡û
>W1710625045
JOTG01000013
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTG]
2281
2371
+
Ser
TGA
[ENA]
¡û
>W1710625070
JOTH01000004
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTH]
37490
37580
+
Ser
TGA
[ENA]
¡û
>W1710625106
JOTI01000036
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTI]
19797
19887
+
Ser
TGA
[ENA]
¡û
>W1710625132
JOTJ01000024
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTJ]
4657
4567
-
Ser
TGA
[ENA]
¡û
>W1710625166
JOTK01000041
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTK]
4640
4550
-
Ser
TGA
[ENA]
¡û
Identical group No.31215 (12 seq.)
>C171051528
CP016817
Mycoplasmatota
Mesomycoplasma hyorhinis MDBK-IPV [CP016817]
521239
521149
-
Ser
TGA
-
¡û
>W131185085
ARTL01000016
Mycoplasmatota
Mesomycoplasma hyorhinis ATCC 17981 [ARTL]
11395
11485
+
Ser
TGA
[ENA]
¡û
>PL191001735
LR214949
Tenericutes
Mycoplasma hyorhinis NCTC10121 plasmid:3 (LR214949)
524731
524641
-
Ser
TGA
[ENA]
¡û
>C191218298
LR214997
Mycoplasmatota
Mesomycoplasma conjunctivae NCTC10147 [LR214997]
854986
854896
-
Ser
TGA
-
¡û
>C191224801
LS991950
Mycoplasmatota
Mesomycoplasma hyorhinis NCTC10130 [LS991950]
524995
524905
-
Ser
TGA
-
¡û
>C141009340
CP006849
Mycoplasmatota
Mesomycoplasma hyorhinis DBS 1050 [CP006849]
521340
521250
-
Ser
TGA
[Ensembl]
¡û
>C09107476
FM864216
Mycoplasmatota
Mesomycoplasma conjunctivae HRC/581T [FM864216]
801860
801770
-
Ser
TGA
[Ensembl]
¡û
>C10109457
CP002170
Mycoplasmatota
Mesomycoplasma hyorhinis HUB-1 [CP002170]
524455
524365
-
Ser
TGA
[Ensembl]
¡û
>W1510643881
CVNB01000015
Chlamydiota
Chlamydia trachomatis LGV98 [CVNB]
7542
7632
+
Ser
TGA
[ENA]
¡û
>C11114511
CP002669
Mycoplasmatota
Mesomycoplasma hyorhinis MCLD [CP002669]
788679
788769
+
Ser
TGA
[Ensembl]
¡û
>C121009167
CP003231
Mycoplasmatota
Mesomycoplasma hyorhinis GDL-1 [CP003231]
521357
521267
-
Ser
TGA
[Ensembl]
¡û
>C131009724
CP003914
Mycoplasmatota
Mesomycoplasma hyorhinis SK76 [CP003914]
524902
524812
-
Ser
TGA
[Ensembl]
¡û
Identical group No.34454 (4 seq.)
>WENV181179176
OEJT01001741
[OEJT] human metagenome; G_DNA_Supragingival plaque
1829
1739
-
Ser
TGA
[ENA]
¢þ
>W141170965
AXZE01000009
Mycoplasmatota
Metamycoplasma salivarium ATCC 23064 [AXZE]
285975
285885
-
Ser
TGA
[ENA]
¡û
>PL191001707
LR214939
Tenericutes
Mycoplasma salivarium NCTC10113 plasmid:2 (LR214939)
162037
161947
-
Ser
TGA
[ENA]
¡û
>W1810232237
PPCB01000197
Campylobacterota
Campylobacter concisus AAUH-5CDo [PPCB]
285
375
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK