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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tenericutes
Anticodon = TTC
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452081 (11 seq.)
>PL191001779
LR214986
Tenericutes
Mycoplasma cynos NCTC10142 plasmid:13 (LR214986)
855876
855801
-
Glu
TTC
[ENA]
¡û
>PL191001856
LR215032
Tenericutes
Mycoplasma gallopavonis NCTC10186 plasmid:2 (LR215032)
334835
334760
-
Glu
TTC
[ENA]
¡û
>C191218078
LR214950
Mycoplasmatota
Mycoplasmopsis gallinacea NCTC10183 [LR214950]
692050
692125
+
Glu
TTC
-
¡û
>C191218441
LR215024
Mycoplasmatota
Mycoplasmopsis glycophila NCTC10194 [LR215024]
226693
226768
+
Glu
TTC
-
¡û
>W141558743
JHWE01000002
Mycoplasmatota
Mycoplasma leonicaptivi ATCC 49890 [JHWE]
12345
12270
-
Glu
TTC
[ENA]
¡û
>W141561113
JHYE01000005
Mycoplasmatota
Mycoplasmopsis glycophila ATCC 35277 [JHYE]
51206
51131
-
Glu
TTC
[ENA]
¡û
>W141732390
JNKA01000020
Mycoplasmatota
Mycoplasmopsis felis ATCC 23391 [JNKA]
17467
17542
+
Glu
TTC
[ENA]
¡û
>W1911768460
QXGN01000009
Mycoplasmatota
Mycoplasmopsis gallopavonis WR1 [QXGN]
19637
19562
-
Glu
TTC
[ENA]
¡û
>C151075544
CP011021
Mycoplasmatota
Mycoplasmopsis gallinacea B2096 8B [CP011021]
615215
615290
+
Glu
TTC
[Ensembl]
¡û
>C151081622
CP011368
Mycoplasmatota
Mycoplasmopsis canis LV [CP011368]
406052
406127
+
Glu
TTC
[Ensembl]
¡û
>C151099845
HF559394
Mycoplasmatota
Mycoplasmopsis cynos C142 [HF559394]
863222
863147
-
Glu
TTC
[Ensembl]
¡û
Identical group No.462760 (7 seq.)
>PL191001839
LR215004
Tenericutes
Mycoplasma conjunctivae NCTC10147 plasmid:8 (LR215004)
112729
112804
+
Glu
TTC
[ENA]
¡û
>C191218143
LR214955
Mycoplasmatota
Mycoplasmopsis fermentans NCTC10117 [LR214955, LR214962]
485955
486030
+
Glu
TTC
-
¡û
>W1910002628
ATFG01000014
Mycoplasmatota
Mycoplasmopsis fermentans MF-I1 [ATFG]
46612
46687
+
Glu
TTC
[ENA]
¡û
>W1910002663
ATFH01000012
Mycoplasmatota
Mycoplasmopsis fermentans MF-I2 [ATFH]
40178
40253
+
Glu
TTC
[ENA]
¡û
>C09107655
AP009608
Mycoplasmatota
Mycoplasmopsis fermentans PG18 [AP009608]
399088
399163
+
Glu
TTC
[Ensembl]
¡û
>C11114235
CP001995
Mycoplasmatota
Mycoplasmopsis fermentans JER [CP001995]
309084
309159
+
Glu
TTC
[Ensembl]
¡û
>C11114270
CP002458
Mycoplasmatota
Mycoplasmopsis fermentans M64 [CP002458]
343234
343309
+
Glu
TTC
[Ensembl]
¡û
Identical group No.464088 (23 seq.)
>W1711799342
MWWN01000002
Mycoplasmatota
Mesomycoplasma hyopneumoniae [MWWN]
17197
17122
-
Glu
TTC
[ENA]
¡û
>W1711942849
NBBN01000052
Mycoplasmatota
Mesomycoplasma hyopneumoniae [NBBN]
340
265
-
Glu
TTC
[ENA]
¡û
>C171051517
CP016817
Mycoplasmatota
Mesomycoplasma hyorhinis MDBK-IPV [CP016817]
659189
659114
-
Glu
TTC
-
¡û
>W131185098
ARTL01000024
Mycoplasmatota
Mesomycoplasma hyorhinis ATCC 17981 [ARTL]
25631
25706
+
Glu
TTC
[ENA]
¡û
>C013574
AE017332
Mycoplasmatota
Mesomycoplasma hyopneumoniae 232 [AE017332]
119844
119769
-
Glu
TTC
[Ensembl]
¡û
>C013580
AE017244
Mycoplasmatota
Mesomycoplasma hyopneumoniae 7448 [AE017244]
335541
335616
+
Glu
TTC
[Ensembl]
¡û
>C013610
AE017243
Mycoplasmatota
Mesomycoplasma hyopneumoniae J [AE017243]
322007
322082
+
Glu
TTC
[Ensembl]
¡û
>W141004149
AFCG01000004
Mycoplasmatota
Mesomycoplasma flocculare ATCC 27716 [AFCG]
77891
77966
+
Glu
TTC
[ENA]
¡û
>PL191001724
LR214949
Tenericutes
Mycoplasma hyorhinis NCTC10121 plasmid:3 (LR214949)
665410
665335
-
Glu
TTC
[ENA]
¡û
>PL191001807
LR214993
Tenericutes
Mycoplasma hyopneumoniae NCTC10127 plasmid:2 (LR214993)
27051
26976
-
Glu
TTC
[ENA]
¡û
>C181071524
CP022714
Mycoplasmatota
Mesomycoplasma hyopneumoniae KM014 [CP022714]
560174
560249
+
Glu
TTC
-
¡û
>C191161514
CP038641
Mycoplasmatota
Mesomycoplasma hyopneumoniae ES-2 [CP038641]
334452
334527
+
Glu
TTC
-
¡û
>C191224790
LS991950
Mycoplasmatota
Mesomycoplasma hyorhinis NCTC10130 [LS991950]
660470
660395
-
Glu
TTC
-
¡û
>C141009329
CP006849
Mycoplasmatota
Mesomycoplasma hyorhinis DBS 1050 [CP006849]
659276
659201
-
Glu
TTC
[Ensembl]
¡û
>C151029048
CP007585
Mycoplasmatota
Mesomycoplasma flocculare ATCC 27399 Ms42 [CP007585]
480479
480554
+
Glu
TTC
[Ensembl]
¡û
>C10109446
CP002170
Mycoplasmatota
Mesomycoplasma hyorhinis HUB-1 [CP002170]
661286
661211
-
Glu
TTC
[Ensembl]
¡û
>W1510472752
CQIE01000634
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 CH43 [CQIE]
305
230
-
Glu
TTC
[ENA]
¡û
>W1510643873
CVNB01000014
Chlamydiota
Chlamydia trachomatis LGV98 [CVNB]
18485
18560
+
Glu
TTC
[ENA]
¡û
>C11114471
CP002274
Mycoplasmatota
Mesomycoplasma hyopneumoniae 168 [CP002274]
350664
350739
+
Glu
TTC
[Ensembl]
¡û
>C121009156
CP003231
Mycoplasmatota
Mesomycoplasma hyorhinis GDL-1 [CP003231]
659293
659218
-
Glu
TTC
[Ensembl]
¡û
>C131002144
CP003131
Mycoplasmatota
Mesomycoplasma hyopneumoniae 168-L [CP003131]
350769
350844
+
Glu
TTC
[Ensembl]
¡û
>C131007155
CP003802
Mycoplasmatota
Mesomycoplasma hyopneumoniae 7422 [CP003802]
348401
348476
+
Glu
TTC
[Ensembl]
¡û
>C131009713
CP003914
Mycoplasmatota
Mesomycoplasma hyorhinis SK76 [CP003914]
660188
660113
-
Glu
TTC
[Ensembl]
¡û
Identical group No.495390 (7 seq.)
>WENV180735246
ODGZ01113639
[ODGZ] human metagenome; G_DNA_Supragingival plaque
333
258
-
Glu
TTC
[ENA]
¢þ
>WENV180751626
ODHS01089819
[ODHS] human metagenome; G_DNA_Supragingival plaque
174
249
+
Glu
TTC
[ENA]
¢þ
>WENV181062851
ODYO01056449
[ODYO] human metagenome; G_DNA_Palatine Tonsils
96
21
-
Glu
TTC
[ENA]
¢þ
>WENV181077505
OEAP01064431
[OEAP] human metagenome; G_DNA_Supragingival plaque
389
464
+
Glu
TTC
[ENA]
¢þ
>WENV181178987
OEJT01000876
[OEJT] human metagenome; G_DNA_Supragingival plaque
17005
16930
-
Glu
TTC
[ENA]
¢þ
>W141170975
AXZE01000010
Mycoplasmatota
Metamycoplasma salivarium ATCC 23064 [AXZE]
129206
129281
+
Glu
TTC
[ENA]
¡û
>PL191001699
LR214939
Tenericutes
Mycoplasma salivarium NCTC10113 plasmid:2 (LR214939)
188994
188919
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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