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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tenericutes
Anticodon = TTG
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.653697 (14 seq.)
>C171068152
CP017813
Mycoplasmatota
Mycoplasmopsis pullorum B359_6 [CP017813]
575352
575426
+
Gln
TTG
-
¡û
>PL191001784
LR214986
Tenericutes
Mycoplasma cynos NCTC10142 plasmid:13 (LR214986)
816269
816195
-
Gln
TTG
[ENA]
¡û
>C191218357
LR215010
Mycoplasmatota
Mycoplasmopsis canis NCTC10146 [LR215010]
708052
707978
-
Gln
TTG
-
¡û
>C191224815
LS991951
Mycoplasmatota
Mycoplasmopsis edwardii NCTC10132 [LS991951]
151852
151926
+
Gln
TTG
-
¡û
>W141558751
JHWE01000009
Mycoplasmatota
Mycoplasma leonicaptivi ATCC 49890 [JHWE]
16390
16316
-
Gln
TTG
[ENA]
¡û
>W141732385
JNKA01000017
Mycoplasmatota
Mycoplasmopsis felis ATCC 23391 [JNKA]
8083
8009
-
Gln
TTG
[ENA]
¡û
>C151081635
CP011368
Mycoplasmatota
Mycoplasmopsis canis LV [CP011368]
739767
739693
-
Gln
TTG
[Ensembl]
¡û
>C151099850
HF559394
Mycoplasmatota
Mycoplasmopsis cynos C142 [HF559394]
822375
822301
-
Gln
TTG
[Ensembl]
¡û
>C161070547
CP014281
Mycoplasmatota
Mycoplasmopsis canis PG 14 [CP014281]
707337
707263
-
Gln
TTG
-
¡û
>W121060476
AJFQ01000006
Mycoplasmatota
Mycoplasmopsis canis PG 14 [AJFQ]
160345
160419
+
Gln
TTG
[ENA]
¡û
>W121060507
AJFR01000005
Mycoplasmatota
Mycoplasmopsis canis UF31 [AJFR]
160326
160400
+
Gln
TTG
[ENA]
¡û
>W121060538
AJFS01000005
Mycoplasmatota
Mycoplasmopsis canis UF33 [AJFS]
160349
160423
+
Gln
TTG
[ENA]
¡û
>W121060569
AJFT01000005
Mycoplasmatota
Mycoplasmopsis canis UFG1 [AJFT]
160362
160436
+
Gln
TTG
[ENA]
¡û
>W121060600
AJFU01000006
Mycoplasmatota
Mycoplasmopsis canis UFG4 [AJFU]
160351
160425
+
Gln
TTG
[ENA]
¡û
Identical group No.656346 (35 seq.)
>W1711799350
MWWN01000004
Mycoplasmatota
Mesomycoplasma hyopneumoniae [MWWN]
131867
131793
-
Gln
TTG
[ENA]
¡û
>W1711942871
NBBN01000212
Mycoplasmatota
Mesomycoplasma hyopneumoniae [NBBN]
2146
2072
-
Gln
TTG
[ENA]
¡û
>W1712078622
NGVL01000161
Gammaproteobacteria
Escherichia coli [NGVL]
293
219
-
Gln
TTG
[ENA]
¡û
>C171051523
CP016817
Mycoplasmatota
Mesomycoplasma hyorhinis MDBK-IPV [CP016817]
581934
581860
-
Gln
TTG
-
¡û
>W131185091
ARTL01000017
Mycoplasmatota
Mesomycoplasma hyorhinis ATCC 17981 [ARTL]
3186
3112
-
Gln
TTG
[ENA]
¡û
>C013569
AE017332
Mycoplasmatota
Mesomycoplasma hyopneumoniae 232 [AE017332]
477549
477475
-
Gln
TTG
[Ensembl]
¡û
>C013591
AE017244
Mycoplasmatota
Mesomycoplasma hyopneumoniae 7448 [AE017244]
487651
487577
-
Gln
TTG
[Ensembl]
¡û
>C013621
AE017243
Mycoplasmatota
Mesomycoplasma hyopneumoniae J [AE017243]
471097
471023
-
Gln
TTG
[Ensembl]
¡û
>W141004147
AFCG01000001
Mycoplasmatota
Mesomycoplasma flocculare ATCC 27716 [AFCG]
32263
32189
-
Gln
TTG
[ENA]
¡û
>W141283042
JAKV01000001
Mycoplasmatota
Mesomycoplasma ovipneumoniae NM2010 [JAKV]
773414
773340
-
Gln
TTG
[ENA]
¡û
>W141450897
JFAD01000021
Mycoplasmatota
Mesomycoplasma ovipneumoniae 14811 [JFAD]
1980
1906
-
Gln
TTG
[ENA]
¡û
>PL191001730
LR214949
Tenericutes
Mycoplasma hyorhinis NCTC10121 plasmid:3 (LR214949)
588161
588087
-
Gln
TTG
[ENA]
¡û
>C181071531
CP022714
Mycoplasmatota
Mesomycoplasma hyopneumoniae KM014 [CP022714]
708662
708588
-
Gln
TTG
-
¡û
>C191161525
CP038641
Mycoplasmatota
Mesomycoplasma hyopneumoniae ES-2 [CP038641]
510962
510888
-
Gln
TTG
-
¡û
>C191218280
LR214992
Mycoplasmatota
Mesomycoplasma hyopneumoniae NCTC10127 [LR214992]
255985
255911
-
Gln
TTG
-
¡û
>C191218480
LR215028
Mycoplasmatota
Mesomycoplasma ovipneumoniae NCTC10151 [LR215025, LR215028]
545184
545110
-
Gln
TTG
-
¡û
>C191224796
LS991950
Mycoplasmatota
Mesomycoplasma hyorhinis NCTC10130 [LS991950]
583166
583092
-
Gln
TTG
-
¡û
>C141009335
CP006849
Mycoplasmatota
Mesomycoplasma hyorhinis DBS 1050 [CP006849]
582024
581950
-
Gln
TTG
[Ensembl]
¡û
>C151029046
CP007585
Mycoplasmatota
Mesomycoplasma flocculare ATCC 27399 Ms42 [CP007585]
359079
359153
+
Gln
TTG
[Ensembl]
¡û
>C10109452
CP002170
Mycoplasmatota
Mesomycoplasma hyorhinis HUB-1 [CP002170]
582426
582352
-
Gln
TTG
[Ensembl]
¡û
>W1510643899
CVNB01000035
Chlamydiota
Chlamydia trachomatis LGV98 [CVNB]
7883
7957
+
Gln
TTG
[ENA]
¡û
>C11114476
CP002274
Mycoplasmatota
Mesomycoplasma hyopneumoniae 168 [CP002274]
499693
499767
+
Gln
TTG
[Ensembl]
¡û
>C11114506
CP002669
Mycoplasmatota
Mesomycoplasma hyorhinis MCLD [CP002669]
730728
730802
+
Gln
TTG
[Ensembl]
¡û
>W11163141
AFHO01000021
Mycoplasmatota
Mesomycoplasma ovipneumoniae SC01 [AFHO]
12636
12710
+
Gln
TTG
[ENA]
¡û
>C121009162
CP003231
Mycoplasmatota
Mesomycoplasma hyorhinis GDL-1 [CP003231]
582041
581967
-
Gln
TTG
[Ensembl]
¡û
>C131002149
CP003131
Mycoplasmatota
Mesomycoplasma hyopneumoniae 168-L [CP003131]
500709
500783
+
Gln
TTG
[Ensembl]
¡û
>C131007166
CP003802
Mycoplasmatota
Mesomycoplasma hyopneumoniae 7422 [CP003802]
496090
496016
-
Gln
TTG
[Ensembl]
¡û
>C131009719
CP003914
Mycoplasmatota
Mesomycoplasma hyorhinis SK76 [CP003914]
582883
582809
-
Gln
TTG
[Ensembl]
¡û
>W1710625001
JOTE01000030
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTE]
12657
12731
+
Gln
TTG
[ENA]
¡û
>W1710625011
JOTF01000009
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTF]
12648
12722
+
Gln
TTG
[ENA]
¡û
>W1710625053
JOTG01000042
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTG]
3017
2943
-
Gln
TTG
[ENA]
¡û
>W1710625080
JOTH01000011
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTH]
30787
30861
+
Gln
TTG
[ENA]
¡û
>W1710625099
JOTI01000014
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTI]
39998
39924
-
Gln
TTG
[ENA]
¡û
>W1710625138
JOTJ01000029
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTJ]
13550
13476
-
Gln
TTG
[ENA]
¡û
>W1710625171
JOTK01000056
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTK]
16347
16421
+
Gln
TTG
[ENA]
¡û
Identical group No.659518 (8 seq.)
>PL191001835
LR215003
Tenericutes
Mycoplasma conjunctivae NCTC10147 plasmid:7 (LR215003)
83385
83311
-
Gln
TTG
[ENA]
¡û
>C191218138
LR214955
Mycoplasmatota
Mycoplasmopsis fermentans NCTC10117 [LR214955, LR214962]
162643
162717
+
Gln
TTG
-
¡û
>C191218607
LR215037
Mycoplasmatota
Mycoplasmopsis maculosa NCTC10168 [LR215037]
553727
553653
-
Gln
TTG
-
¡û
>W1910002619
ATFG01000001
Mycoplasmatota
Mycoplasmopsis fermentans MF-I1 [ATFG]
8172
8246
+
Gln
TTG
[ENA]
¡û
>W1910002654
ATFH01000003
Mycoplasmatota
Mycoplasmopsis fermentans MF-I2 [ATFH]
969
1043
+
Gln
TTG
[ENA]
¡û
>C09107671
AP009608
Mycoplasmatota
Mycoplasmopsis fermentans PG18 [AP009608]
742899
742825
-
Gln
TTG
[Ensembl]
¡û
>C11114230
CP001995
Mycoplasmatota
Mycoplasmopsis fermentans JER [CP001995]
20103
20177
+
Gln
TTG
[Ensembl]
¡û
>C11114265
CP002458
Mycoplasmatota
Mycoplasmopsis fermentans M64 [CP002458]
20130
20204
+
Gln
TTG
[Ensembl]
¡û
Identical group No.676510 (7 seq.)
>PL191001862
LR215032
Tenericutes
Mycoplasma gallopavonis NCTC10186 plasmid:2 (LR215032)
236010
235936
-
Gln
TTG
[ENA]
¡û
>C191218089
LR214950
Mycoplasmatota
Mycoplasmopsis gallinacea NCTC10183 [LR214950]
714443
714369
-
Gln
TTG
-
¡û
>C191218446
LR215024
Mycoplasmatota
Mycoplasmopsis glycophila NCTC10194 [LR215024]
414716
414790
+
Gln
TTG
-
¡û
>W141561124
JHYE01000015
Mycoplasmatota
Mycoplasmopsis glycophila ATCC 35277 [JHYE]
21406
21480
+
Gln
TTG
[ENA]
¡û
>W141731312
JNIZ01000003
Mycoplasmatota
Mycoplasmopsis sturni DSM 22021 [JNIZ]
99272
99198
-
Gln
TTG
[ENA]
¡û
>W1911768473
QXGN01000044
Mycoplasmatota
Mycoplasmopsis gallopavonis WR1 [QXGN]
1985
1911
-
Gln
TTG
[ENA]
¡û
>C151075551
CP011021
Mycoplasmatota
Mycoplasmopsis gallinacea B2096 8B [CP011021]
665576
665502
-
Gln
TTG
[Ensembl]
¡û
Identical group No.691546 (5 seq.)
>WENV180809775
ODJK01045177
[ODJK] human metagenome; G_DNA_Subgingival plaque
195
121
-
Gln
TTG
[ENA]
¢þ
>WENV180950825
ODUH01002436
[ODUH] human metagenome; G_DNA_Subgingival plaque
3430
3356
-
Gln
TTG
[ENA]
¢þ
>WENV181178754
OEJT01000208
[OEJT] human metagenome; G_DNA_Supragingival plaque
35658
35584
-
Gln
TTG
[ENA]
¢þ
>W141170956
AXZE01000009
Mycoplasmatota
Metamycoplasma salivarium ATCC 23064 [AXZE]
126786
126860
+
Gln
TTG
[ENA]
¡û
>PL191001680
LR214939
Tenericutes
Mycoplasma salivarium NCTC10113 plasmid:2 (LR214939)
2853
2927
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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