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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tenericutes
Anticodon = TTT
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452086 (44 seq.)
>W131098180
AORH01000033
Mycoplasmatota
Mycoplasmopsis bovigenitalium 51080 [AORH]
283
358
+
Lys
TTT
[ENA]
¡û
>W131182369
ARQH01000040
Mycoplasmatota
Mycoplasmopsis synoviae ATCC 25204 [ARQH]
57336
57411
+
Lys
TTT
[ENA]
¡û
>W131221257
AUAH01000003
Mycoplasmatota
Mycoplasmopsis arginini ATCC 23838 [AUAH]
374
299
-
Lys
TTT
[ENA]
¡û
>C014148
AE017245
Mycoplasmatota
Mycoplasmopsis synoviae 53 [AE017245]
82099
82024
-
Lys
TTT
[Ensembl]
¡û
>W141280442
JAHB01000013
Mycoplasmatota
Mycoplasmopsis cricetuli ATCC 35279 [JAHB]
9405
9330
-
Lys
TTT
[ENA]
¡û
>PL191001790
LR214986
Tenericutes
Mycoplasma cynos NCTC10142 plasmid:13 (LR214986)
108487
108412
-
Lys
TTT
[ENA]
¡û
>PL191001853
LR215032
Tenericutes
Mycoplasma gallopavonis NCTC10186 plasmid:2 (LR215032)
335994
336069
+
Lys
TTT
[ENA]
¡û
>C181003527
AP017902
Mycoplasmatota
Mycoplasmopsis bovigenitalium HAZ596 [AP017902]
611677
611752
+
Lys
TTT
-
¡û
>C181049482
CP021129
Mycoplasmatota
Mycoplasmopsis synoviae MS-H [CP021129]
84402
84327
-
Lys
TTT
-
¡û
>C181093516
CP024049
Mycoplasmatota
Mycoplasmopsis bovirhinis GS01 [CP024049]
150017
149942
-
Lys
TTT
-
¡û
>C191001018
AP018135
Mycoplasmatota
Mycoplasmopsis bovirhinis HAZ141_2 [AP018135]
173118
173193
+
Lys
TTT
-
¡û
>C191006217
AP018940
Mycoplasmatota
Mycoplasmopsis californica HAZ106_1 [AP018940]
700116
700041
-
Lys
TTT
-
¡û
>C191006248
AP018941
Mycoplasmatota
Mycoplasmopsis californica HAZ106_1erythromycin [AP018941]
700115
700040
-
Lys
TTT
-
¡û
>C191006279
AP018942
Mycoplasmatota
Mycoplasmopsis californica HAZ106_1lincomycin [AP018942]
700115
700040
-
Lys
TTT
-
¡û
>C191006310
AP018943
Mycoplasmatota
Mycoplasmopsis californica HAZ160_1erythromycin [AP018943]
694522
694447
-
Lys
TTT
-
¡û
>C191006341
AP018944
Mycoplasmatota
Mycoplasmopsis californica HAZ160_1lincomycin [AP018944]
694522
694447
-
Lys
TTT
-
¡û
>C191182997
CP040825
Mycoplasmatota
Mycoplasma nasistruthionis 2F1A [CP040825]
529601
529676
+
Lys
TTT
-
¡û
>C191189312
KP704286
Mycoplasmatota
Mycoplasmopsis synoviae MS-H [KP704286]
610723
610648
-
Lys
TTT
-
¡û
>C191218186
LR214970
Mycoplasmatota
Mycoplasmopsis bovigenitalium NCTC10122 [LR214970]
733523
733448
-
Lys
TTT
-
¡û
>C191218244
LR214972
Mycoplasmatota
Mycoplasmopsis bovirhinis NCTC10118 [LR214972]
388432
388507
+
Lys
TTT
-
¡û
>C191218353
LR215010
Mycoplasmatota
Mycoplasmopsis canis NCTC10146 [LR215010]
780455
780530
+
Lys
TTT
-
¡û
>C191218464
LR215024
Mycoplasmatota
Mycoplasmopsis glycophila NCTC10194 [LR215024]
225619
225544
-
Lys
TTT
-
¡û
>C191218548
LR215036
Mycoplasmatota
Mycoplasmopsis citelli NCTC10181 [LR215036]
419523
419598
+
Lys
TTT
-
¡û
>C191218626
LR215039
Mycoplasmatota
Mycoplasmopsis columboralis NCTC10179 [LR215039]
925935
925860
-
Lys
TTT
-
¡û
>C191224836
LS991951
Mycoplasmatota
Mycoplasmopsis edwardii NCTC10132 [LS991951]
40714
40639
-
Lys
TTT
-
¡û
>C191224897
LS991953
Mycoplasmatota
Mycoplasmopsis synoviae NCTC10124 [LS991953]
83196
83121
-
Lys
TTT
-
¡û
>W141558761
JHWE01000032
Mycoplasmatota
Mycoplasma leonicaptivi ATCC 49890 [JHWE]
6849
6924
+
Lys
TTT
[ENA]
¡û
>W141561111
JHYE01000005
Mycoplasmatota
Mycoplasmopsis glycophila ATCC 35277 [JHYE]
52280
52355
+
Lys
TTT
[ENA]
¡û
>W141731296
JNIZ01000002
Mycoplasmatota
Mycoplasmopsis sturni DSM 22021 [JNIZ]
136515
136590
+
Lys
TTT
[ENA]
¡û
>W141732352
JNJZ01000003
Mycoplasmatota
Mycoplasmopsis columboralis ATCC 29258 [JNJZ]
43890
43815
-
Lys
TTT
[ENA]
¡û
>W141732372
JNKA01000006
Mycoplasmatota
Mycoplasmopsis felis ATCC 23391 [JNKA]
32322
32397
+
Lys
TTT
[ENA]
¡û
>W141807446
JPOK01000005
Mycoplasmatota
Mycoplasma buteonis [JPOK]
184756
184831
+
Lys
TTT
[ENA]
¡û
>W1911768458
QXGN01000009
Mycoplasmatota
Mycoplasmopsis gallopavonis WR1 [QXGN]
20796
20871
+
Lys
TTT
[ENA]
¡û
>C151001429
AP013353
Mycoplasmatota
Mycoplasmopsis californica HAZ160_1 [AP013353]
694522
694447
-
Lys
TTT
[Ensembl]
¡û
>C151026426
CP007521
Mycoplasmatota
Mycoplasmopsis californica ST-6 [CP007521]
108177
108252
+
Lys
TTT
[Ensembl]
¡û
>C151076528
CP011096
Mycoplasmatota
Mycoplasmopsis synoviae ATCC 25204 WVU1853 [CP011096]
83253
83178
-
Lys
TTT
[Ensembl]
¡û
>C151081631
CP011368
Mycoplasmatota
Mycoplasmopsis canis LV [CP011368]
809316
809391
+
Lys
TTT
[Ensembl]
¡û
>C151099856
HF559394
Mycoplasmatota
Mycoplasmopsis cynos C142 [HF559394]
99062
98987
-
Lys
TTT
[Ensembl]
¡û
>C161070543
CP014281
Mycoplasmatota
Mycoplasmopsis canis PG 14 [CP014281]
779740
779815
+
Lys
TTT
-
¡û
>W121060480
AJFQ01000006
Mycoplasmatota
Mycoplasmopsis canis PG 14 [AJFQ]
91320
91245
-
Lys
TTT
[ENA]
¡û
>W121060511
AJFR01000005
Mycoplasmatota
Mycoplasmopsis canis UF31 [AJFR]
91303
91228
-
Lys
TTT
[ENA]
¡û
>W121060542
AJFS01000005
Mycoplasmatota
Mycoplasmopsis canis UF33 [AJFS]
91324
91249
-
Lys
TTT
[ENA]
¡û
>W121060573
AJFT01000005
Mycoplasmatota
Mycoplasmopsis canis UFG1 [AJFT]
91335
91260
-
Lys
TTT
[ENA]
¡û
>W121060604
AJFU01000006
Mycoplasmatota
Mycoplasmopsis canis UFG4 [AJFU]
91323
91248
-
Lys
TTT
[ENA]
¡û
Identical group No.457427 (45 seq.)
>W1711799330
MWWN01000002
Mycoplasmatota
Mesomycoplasma hyopneumoniae [MWWN]
192215
192290
+
Lys
TTT
[ENA]
¡û
>W1711942860
NBBN01000161
Mycoplasmatota
Mesomycoplasma hyopneumoniae [NBBN]
32
107
+
Lys
TTT
[ENA]
¡û
>C171051515
CP016817
Mycoplasmatota
Mesomycoplasma hyorhinis MDBK-IPV [CP016817]
666739
666664
-
Lys
TTT
-
¡û
>W131185096
ARTL01000024
Mycoplasmatota
Mesomycoplasma hyorhinis ATCC 17981 [ARTL]
18093
18168
+
Lys
TTT
[ENA]
¡û
>W131214884
ATUN01000006
Mycoplasmatota
Mesomycoplasma moatsii ATCC 27625 [ATUN]
46563
46638
+
Lys
TTT
[ENA]
¡û
>C013552
AE017332
Mycoplasmatota
Mesomycoplasma hyopneumoniae 232 [AE017332]
294908
294983
+
Lys
TTT
[Ensembl]
¡û
>C013598
AE017244
Mycoplasmatota
Mesomycoplasma hyopneumoniae 7448 [AE017244]
154411
154336
-
Lys
TTT
[Ensembl]
¡û
>C013628
AE017243
Mycoplasmatota
Mesomycoplasma hyopneumoniae J [AE017243]
147131
147056
-
Lys
TTT
[Ensembl]
¡û
>W141004161
AFCG01000005
Mycoplasmatota
Mesomycoplasma flocculare ATCC 27716 [AFCG]
35316
35241
-
Lys
TTT
[ENA]
¡û
>W141283037
JAKV01000001
Mycoplasmatota
Mesomycoplasma ovipneumoniae NM2010 [JAKV]
525112
525187
+
Lys
TTT
[ENA]
¡û
>W141450912
JFAD01000035
Mycoplasmatota
Mesomycoplasma ovipneumoniae 14811 [JFAD]
11954
12029
+
Lys
TTT
[ENA]
¡û
>PL191001722
LR214949
Tenericutes
Mycoplasma hyorhinis NCTC10121 plasmid:3 (LR214949)
672960
672885
-
Lys
TTT
[ENA]
¡û
>PL191001795
LR214993
Tenericutes
Mycoplasma hyopneumoniae NCTC10127 plasmid:2 (LR214993)
202129
202204
+
Lys
TTT
[ENA]
¡û
>C181071538
CP022714
Mycoplasmatota
Mesomycoplasma hyopneumoniae KM014 [CP022714]
385255
385180
-
Lys
TTT
-
¡û
>C181096438
CP024161
Mycoplasmatota
Mesomycoplasma dispar GS01 [CP024161]
893781
893856
+
Lys
TTT
-
¡û
>C191161532
CP038641
Mycoplasmatota
Mesomycoplasma hyopneumoniae ES-2 [CP038641]
152701
152626
-
Lys
TTT
-
¡û
>C191218217
LR214971
Mycoplasmatota
Mesomycoplasma dispar NCTC10125 [LR214971]
919405
919480
+
Lys
TTT
-
¡û
>C191218304
LR214997
Mycoplasmatota
Mesomycoplasma conjunctivae NCTC10147 [LR214997]
715634
715559
-
Lys
TTT
-
¡û
>C191218469
LR215028
Mycoplasmatota
Mesomycoplasma ovipneumoniae NCTC10151 [LR215025, LR215028]
286532
286607
+
Lys
TTT
-
¡û
>C191224788
LS991950
Mycoplasmatota
Mesomycoplasma hyorhinis NCTC10130 [LS991950]
668008
667933
-
Lys
TTT
-
¡û
>W1910000239
AGRE01000019
Mycoplasmatota
Mesomycoplasma ovipneumoniae ATCC 29419 [AGRE]
6220
6295
+
Lys
TTT
[ENA]
¡û
>W1910000270
AJQV01000019
Mycoplasmatota
Mycoplasma mycoides subsp. capri str. G1201 [AJQV]
6220
6295
+
Lys
TTT
[ENA]
¡û
>C141009327
CP006849
Mycoplasmatota
Mesomycoplasma hyorhinis DBS 1050 [CP006849]
666826
666751
-
Lys
TTT
[Ensembl]
¡û
>W1910573326
JOTL01000043
Mycoplasmatota
Mesomycoplasma ovipneumoniae ATCC 29419 Y98 [JOTL]
6222
6297
+
Lys
TTT
[ENA]
¡û
>C09107482
FM864216
Mycoplasmatota
Mesomycoplasma conjunctivae HRC/581T [FM864216]
662513
662438
-
Lys
TTT
[Ensembl]
¡û
>C151017596
CP007154
Mycoplasmatota
Mesomycoplasma bovoculi M165/69 [CP007154]
294176
294251
+
Lys
TTT
[Ensembl]
¡û
>C151019147
CP007229
Mycoplasmatota
Mesomycoplasma dispar ATCC 27140 [CP007229]
919248
919323
+
Lys
TTT
[Ensembl]
¡û
>C151029063
CP007585
Mycoplasmatota
Mesomycoplasma flocculare ATCC 27399 Ms42 [CP007585]
133321
133246
-
Lys
TTT
[Ensembl]
¡û
>C10109444
CP002170
Mycoplasmatota
Mesomycoplasma hyorhinis HUB-1 [CP002170]
668837
668762
-
Lys
TTT
[Ensembl]
¡û
>W1510472738
CQIE01000255
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 CH43 [CQIE]
1004
929
-
Lys
TTT
[ENA]
¡û
>W1510643871
CVNB01000014
Chlamydiota
Chlamydia trachomatis LGV98 [CVNB]
10935
11010
+
Lys
TTT
[ENA]
¡û
>C11114469
CP002274
Mycoplasmatota
Mesomycoplasma hyopneumoniae 168 [CP002274]
208862
208937
+
Lys
TTT
[Ensembl]
¡û
>C11114498
CP002669
Mycoplasmatota
Mesomycoplasma hyorhinis MCLD [CP002669]
645932
646007
+
Lys
TTT
[Ensembl]
¡û
>W11163123
AFHO01000008
Mycoplasmatota
Mesomycoplasma ovipneumoniae SC01 [AFHO]
71415
71490
+
Lys
TTT
[ENA]
¡û
>C121009154
CP003231
Mycoplasmatota
Mesomycoplasma hyorhinis GDL-1 [CP003231]
666843
666768
-
Lys
TTT
[Ensembl]
¡û
>C131002142
CP003131
Mycoplasmatota
Mesomycoplasma hyopneumoniae 168-L [CP003131]
208817
208892
+
Lys
TTT
[Ensembl]
¡û
>C131007173
CP003802
Mycoplasmatota
Mesomycoplasma hyopneumoniae 7422 [CP003802]
173403
173328
-
Lys
TTT
[Ensembl]
¡û
>C131009711
CP003914
Mycoplasmatota
Mesomycoplasma hyorhinis SK76 [CP003914]
667738
667663
-
Lys
TTT
[Ensembl]
¡û
>W1710624982
JOTE01000007
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTE]
38714
38639
-
Lys
TTT
[ENA]
¡û
>W1710625028
JOTF01000026
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTF]
6113
6188
+
Lys
TTT
[ENA]
¡û
>W1710625058
JOTG01000053
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTG]
6146
6221
+
Lys
TTT
[ENA]
¡û
>W1710625085
JOTH01000021
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTH]
5357
5282
-
Lys
TTT
[ENA]
¡û
>W1710625113
JOTI01000048
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTI]
6239
6314
+
Lys
TTT
[ENA]
¡û
>W1710625124
JOTJ01000001
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTJ]
5377
5302
-
Lys
TTT
[ENA]
¡û
>W1710625175
JOTK01000068
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTK]
7563
7488
-
Lys
TTT
[ENA]
¡û
Identical group No.463009 (8 seq.)
>PL191001759
LR214964
Tenericutes
Mycoplasma fermentans NCTC10117 plasmid:10 (LR214964)
19365
19290
-
Lys
TTT
[ENA]
¡û
>PL191001820
LR215003
Tenericutes
Mycoplasma conjunctivae NCTC10147 plasmid:7 (LR215003)
532643
532568
-
Lys
TTT
[ENA]
¡û
>W141701775
JMKY01000007
Mycoplasmatota
Mycoplasmopsis lipofaciens ATCC 35015 [JMKY]
19540
19465
-
Lys
TTT
[ENA]
¡û
>W1910002645
ATFG01000040
Mycoplasmatota
Mycoplasmopsis fermentans MF-I1 [ATFG]
162
87
-
Lys
TTT
[ENA]
¡û
>W1910002680
ATFH01000035
Mycoplasmatota
Mycoplasmopsis fermentans MF-I2 [ATFH]
163
88
-
Lys
TTT
[ENA]
¡û
>C09107662
AP009608
Mycoplasmatota
Mycoplasmopsis fermentans PG18 [AP009608]
600266
600341
+
Lys
TTT
[Ensembl]
¡û
>C11114247
CP001995
Mycoplasmatota
Mycoplasmopsis fermentans JER [CP001995]
790192
790117
-
Lys
TTT
[Ensembl]
¡û
>C11114282
CP002458
Mycoplasmatota
Mycoplasmopsis fermentans M64 [CP002458]
918901
918826
-
Lys
TTT
[Ensembl]
¡û
Identical group No.495395 (5 seq.)
>WENV180735280
ODGZ01132685
[ODGZ] human metagenome; G_DNA_Supragingival plaque
210
135
-
Lys
TTT
[ENA]
¢þ
>WENV180788212
ODIS01039274
[ODIS] human metagenome; G_DNA_Supragingival plaque
498
423
-
Lys
TTT
[ENA]
¢þ
>WENV181178573
OEJT01000066
[OEJT] human metagenome; G_DNA_Supragingival plaque
50861
50936
+
Lys
TTT
[ENA]
¢þ
>W141170980
AXZE01000012
Mycoplasmatota
Metamycoplasma salivarium ATCC 23064 [AXZE]
50792
50867
+
Lys
TTT
[ENA]
¡û
>PL191001686
LR214939
Tenericutes
Mycoplasma salivarium NCTC10113 plasmid:2 (LR214939)
387276
387351
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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