tRNA genes clustered and arranged according to each identical group

The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)

Anticodon = GCT

HIT: 31 Group(s).
Download Sequence Representative sequence of each cluster
View ClustalW result
Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.9239 (1 seq.)
>SRA1003451 SRR002326.477634 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 11 104 + Ser GCT [SRA]
Identical group No.10781 (1 seq.)
>SRA1003928 SRR002328.42726 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 98 5 - Ser GCT [SRA]
Identical group No.10783 (1 seq.)
>SRA1004230 SRR002328.212969 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 238 147 - Ser GCT [SRA]
Identical group No.13599 (5 seq.)
>W1710893624 LNEY01000016 Betaproteobacteria Burkholderiales bacterium Ga0077547 [LNEY] 40738 40830 + Ser GCT [ENA] ¡û
>WENV170551998 CXWJ01033755 [CXWJ] wastewater metagenome; activated sludge 3974 4066 + Ser GCT [ENA] ¢þ
>WENV170710883 LNFM01002921 [LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant 12133 12041 - Ser GCT [ENA] ¢þ
>SRA1004160 SRR002328.177282 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 25 117 + Ser GCT [SRA]
>W1610753890 LNEY01000016 Betaproteobacteria Burkholderiales bacterium Ga0077547 [LNEY] 40738 40830 + Ser GCT [ENA] ¡û
Identical group No.14304 (3 seq.)
>W141561780 JHYS01000015 Betaproteobacteria Simplicispira psychrophila DSM 11588 [JHYS] 1324 1232 - Ser GCT [ENA] ¡û
>SRA1002791 SRR002326.18270 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 154 246 + Ser GCT [SRA]
>SRA1004264 SRR002328.231206 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 114 206 + Ser GCT [SRA]
Identical group No.14305 (4 seq.)
>SRA1002837 SRR002326.50256 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 88 180 + Ser GCT [SRA]
>SRA1003291 SRR002326.368515 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 15 107 + Ser GCT [SRA]
>SRA1004125 SRR002328.160238 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 53 145 + Ser GCT [SRA]
>SRA1004332 SRR002328.282087 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 53 145 + Ser GCT [SRA]
Identical group No.14307 (1 seq.)
>SRA1003160 SRR002326.252952 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 222 130 - Ser GCT [SRA]
Identical group No.17207 (1 seq.)
>SRA1003902 SRR002328.20744 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 157 249 + Ser GCT [SRA]
Identical group No.17208 (1 seq.)
>SRA1004294 SRR002328.254527 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 98 6 - Ser GCT [SRA]
Identical group No.22542 (1 seq.)
>SRA1002952 SRR002326.119463 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 131 42 - Ser GCT [SRA]
Identical group No.22544 (2 seq.)
>W1711377636 MDZC01000051 Bacteroidota Hymenobacter glacialis CCM 8648 [MDZC] 55014 54924 - Ser GCT [ENA] ¡û
>SRA1003124 SRR002326.220953 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 31 121 + Ser GCT [SRA]
Identical group No.22545 (1 seq.)
>SRA1003152 SRR002326.245288 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 236 145 - Ser GCT [SRA]
Identical group No.22546 (1 seq.)
>SRA1003189 SRR002326.287555 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 249 161 - Ser GCT [SRA]
Identical group No.26593 (2 seq.)
>C181121428 CP025704 Bdellovibrionota Bacteriovorax stolpii DSM 12778 [CP025704] 47241 47332 + Ser GCT - ¡û
>SRA1003913 SRR002328.29346 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 95 186 + Ser GCT [SRA]
Identical group No.26594 (2 seq.)
>WENV170977082 MTKZ01016747 [MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant 8089 7998 - Ser GCT [ENA] ¢þ
>SRA1003966 SRR002328.62130 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 131 42 - Ser GCT [SRA]
Identical group No.26598 (3 seq.)
>C181001895 AP017422 Bacteroidota Filimonas lacunae NBRC 104114 [AP017422] 1526 1615 + Ser GCT - ¡û
>SRA1004174 SRR002328.184097 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 291 202 - Ser GCT [SRA]
>W1710599374 FTOR01000004 Bacteroidota Filimonas lacunae [FTOR] 306061 305970 - Ser GCT [ENA] ¡û
Identical group No.26604 (1 seq.)
>SRA1004140 SRR002328.168169 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 37 128 + Ser GCT [SRA]
Identical group No.31035 (34 seq.)
>WENV170980795 MWVT01001317 [MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil 4227 4317 + Ser GCT [ENA] ¢þ
>WENV170980980 MWVT01014018 [MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil 1088 1178 + Ser GCT [ENA] ¢þ
>WENV170982092 MWVU01012005 [MWVU] soil metagenome; TG1-5 sample; Antarctic (ecotone) soil 535 625 + Ser GCT [ENA] ¢þ
>WENV170982631 MWVU01174461 [MWVU] soil metagenome; TG1-5 sample; Antarctic (ecotone) soil 190 100 - Ser GCT [ENA] ¢þ
>WENV170982782 MWVV01000028 [MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil 42106 42196 + Ser GCT [ENA] ¢þ
>WENV170982822 MWVV01000154 [MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil 4865 4955 + Ser GCT [ENA] ¢þ
>WENV170982866 MWVV01000542 [MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil 11114 11204 + Ser GCT [ENA] ¢þ
>WENV170983165 MWVV01009599 [MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil 932 1022 + Ser GCT [ENA] ¢þ
>WENV170983477 MWVV01039503 [MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil 201 291 + Ser GCT [ENA] ¢þ
>WENV170985714 MWVX01000921 [MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil 6266 6356 + Ser GCT [ENA] ¢þ
>WENV170985721 MWVX01001025 [MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil 4011 3921 - Ser GCT [ENA] ¢þ
>WENV170987151 MWVX01133932 [MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil 379 289 - Ser GCT [ENA] ¢þ
>WENV170987205 MWVX01141319 [MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil 445 535 + Ser GCT [ENA] ¢þ
>WENV170987345 MWVX01174110 [MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil 158 248 + Ser GCT [ENA] ¢þ
>WENV170987843 MWVX01292281 [MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil 281 191 - Ser GCT [ENA] ¢þ
>WENV170988909 MWVY01027531 [MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil 358 448 + Ser GCT [ENA] ¢þ
>WENV170989130 MWVZ01000205 [MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil 529 619 + Ser GCT [ENA] ¢þ
>WENV170989274 MWVZ01008121 [MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil 521 431 - Ser GCT [ENA] ¢þ
>WENV170989278 MWVZ01008285 [MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil 1558 1468 - Ser GCT [ENA] ¢þ
>WENV170989653 MWVZ01073320 [MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil 324 234 - Ser GCT [ENA] ¢þ
>WENV170992694 MWWB01068530 [MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil 481 391 - Ser GCT [ENA] ¢þ
>WENV170992700 MWWB01069910 [MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil 271 181 - Ser GCT [ENA] ¢þ
>WENV170993344 MWWB01270131 [MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil 38 128 + Ser GCT [ENA] ¢þ
>WENV170993652 MWWB01387496 [MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil 212 122 - Ser GCT [ENA] ¢þ
>WENV170994057 MWWD01006000 [MWWD] soil metagenome; MS2-2 sample; Antarctic (ecotone) soil 1166 1076 - Ser GCT [ENA] ¢þ
>WENV170994058 MWWD01006000 [MWWD] soil metagenome; MS2-2 sample; Antarctic (ecotone) soil 107 17 - Ser GCT [ENA] ¢þ
>WENV170994176 MWWD01025824 [MWWD] soil metagenome; MS2-2 sample; Antarctic (ecotone) soil 101 191 + Ser GCT [ENA] ¢þ
>WENV170997203 MWWG01048078 [MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil 523 613 + Ser GCT [ENA] ¢þ
>WENV170997300 MWWG01078555 [MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil 407 497 + Ser GCT [ENA] ¢þ
>WENV170997490 MWWG01153094 [MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil 80 170 + Ser GCT [ENA] ¢þ
>WENV170999162 MWWK01001345 [MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil 3733 3823 + Ser GCT [ENA] ¢þ
>WENV170999375 MWWK01038060 [MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil 237 147 - Ser GCT [ENA] ¢þ
>WENV170999588 MWWK01106104 [MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil 137 47 - Ser GCT [ENA] ¢þ
>SRA1004235 SRR002328.215968 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 175 85 - Ser GCT [SRA]
Identical group No.33050 (5 seq.)
>W1711377563 MDZA01000328 Bacteroidota Hymenobacter coccineus CCM 8649 [MDZA] 33118 33028 - Ser GCT [ENA] ¡û
>C181175078 CP029145 Bacteroidota Hymenobacter nivis NBRC 111535 [CP029145] 577256 577344 + Ser GCT - ¡û
>SRA1003484 SRR002326.494663 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 220 132 - Ser GCT [SRA]
>C161070716 CP014304 Bacteroidota Hymenobacter sp. PAMC 26628 [CP014304] 1808688 1808776 + Ser GCT [Ensembl] ¡û
>W1710587465 FQYN01000003 Bacteroidota Hymenobacter daecheongensis DSM 21074 [FQYN] 148195 148107 - Ser GCT [ENA] ¡û
Identical group No.34518 (1 seq.)
>SRA1002805 SRR002326.30234 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 199 109 - Ser GCT [SRA]
Identical group No.34521 (1 seq.)
>SRA1003011 SRR002326.151476 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 279 189 - Ser GCT [SRA]
Identical group No.34522 (1 seq.)
>SRA1003103 SRR002326.199672 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 102 192 + Ser GCT [SRA]
Identical group No.34869 (7 seq.)
>W1711377586 MDZB01000074 Bacteroidota Hymenobacter lapidarius CCM 8643 [MDZB] 171566 171476 - Ser GCT [ENA] ¡û
>WENV170994052 MWWD01004945 [MWWD] soil metagenome; MS2-2 sample; Antarctic (ecotone) soil 913 1003 + Ser GCT [ENA] ¢þ
>W141734738 JNLX01000185 Bacteroidota Hymenobacter sp. IS2118 [JNLX] 30898 30988 + Ser GCT [ENA] ¡û
>SRA1003982 SRR002328.71442 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 283 193 - Ser GCT [SRA]
>W1511582927 LATM01000001 Bacteroidota Hymenobacter terrenus MIMtkLc17 [LATM] 709883 709793 - Ser GCT [ENA] ¡û
>C161061552 CP013909 Bacteroidota Hymenobacter sedentarius DG5B [CP013909] 3195709 3195799 + Ser GCT [Ensembl] ¡û
>W1710573718 FOXS01000001 Bacteroidota Hymenobacter arizonensis [FOXS] 408244 408334 + Ser GCT [ENA] ¡û
Identical group No.37025 (1 seq.)
>SRA1003594 SRR002327.56441 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 181 270 + Ser GCT [SRA]
Identical group No.37027 (1 seq.)
>SRA1003748 SRR002327.161434 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 113 203 + Ser GCT [SRA]
Identical group No.52735 (4 seq.)
>SRA1003263 SRR002326.349951 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 185 96 - Ser GCT [SRA]
>SRA1003380 SRR002326.424319 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 117 206 + Ser GCT [SRA]
>SRA1003414 SRR002326.452468 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 185 96 - Ser GCT [SRA]
>SRA1003761 SRR002327.168251 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 159 248 + Ser GCT [SRA]
Identical group No.52753 (1 seq.)
>SRA1003246 SRR002326.337531 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 211 124 - Ser GCT [SRA]
Identical group No.93359 (1 seq.)
>SRA1003298 SRR002326.370702 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 102 187 + Ser GCT [SRA]
Identical group No.97223 (1 seq.)
>SRA1003553 SRR002327.25437 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 21 108 + Ser GCT [SRA]
Identical group No.220687 (1 seq.)
>SRA1003209 SRR002326.307297 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 204 123 - Ser GCT [SRA]
Identical group No.321121 (1 seq.)
>SRA1003394 SRR002326.434854 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 201 128 - Ser GCT [SRA]
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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