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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
Anticodon = TGA
HIT:
29 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.9238 (1 seq.)
>SRA1003064
SRR002326.178258
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
148
241
+
Ser
TGA
[SRA]
Identical group No.22541 (1 seq.)
>SRA1002852
SRR002326.59338
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
241
150
-
Ser
TGA
[SRA]
Identical group No.26596 (1 seq.)
>SRA1004084
SRR002328.137604
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
125
216
+
Ser
TGA
[SRA]
Identical group No.40630 (1 seq.)
>SRA1003888
SRR002328.11111
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
56
146
+
Ser
TGA
[SRA]
Identical group No.48650 (29 seq.)
>W1710867159
LMIB01000001
Alphaproteobacteria
Sphingomonas sp. Root710 [LMIB]
867012
867101
+
Ser
TGA
[ENA]
¡û
>W1710868117
LMIV01000001
Alphaproteobacteria
Sphingomonas sp. Root241 [LMIV]
1503154
1503065
-
Ser
TGA
[ENA]
¡û
>W1711353149
MDDS01000081
Alphaproteobacteria
Sphingomonas turrisvirgatae MCT13 [MDDS]
62388
62299
-
Ser
TGA
[ENA]
¡û
>W1711501465
MKRR01000111
Alphaproteobacteria
Sphingomonas sp. 66-10 [MKRR]
45490
45579
+
Ser
TGA
[ENA]
¡û
>C171095083
CP019511
Alphaproteobacteria
Sphingomonas sp. LM7 [CP019511]
985736
985647
-
Ser
TGA
-
¡û
>W131237441
AUOL01000183
Alphaproteobacteria
Sphingomonas sp. JGI 0001003-D23 [AUOL]
1264
1175
-
Ser
TGA
[ENA]
¡û
>WENV180020497
FTCZ01004884
[FTCZ] metagenome; soil
1673
1762
+
Ser
TGA
[ENA]
¢þ
>WENV180022433
FTGF01000331
[FTGF] metagenome; soil
657
746
+
Ser
TGA
[ENA]
¢þ
>WENV181402329
OFTY01000637
[OFTY] sludge metagenome; sludge
14005
14094
+
Ser
TGA
[ENA]
¢þ
>WENV170002837
AGTN01144116
[AGTN] bioreactor metagenome; poplar biomass
388
299
-
Ser
TGA
[ENA]
¢þ
>WENV170010542
APMI01019919
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
9423
9512
+
Ser
TGA
[ENA]
¢þ
>WENV170564977
CZQE01000026
[CZQE] hydrothermal vent metagenome; ocean water
6739
6650
-
Ser
TGA
[ENA]
¢þ
>WENV170574205
FLYM01013498
[FLYM] hot springs metagenome; Sediment
1489
1400
-
Ser
TGA
[ENA]
¢þ
>W141452327
JFBW01000002
Alphaproteobacteria
Sphingomonas jaspsi DSM 18422 [JFBW]
1711329
1711240
-
Ser
TGA
[ENA]
¡û
>C181081601
CP023449
Alphaproteobacteria
Rhizorhabdus dicambivorans Ndbn-20 [CP023449]
2833731
2833820
+
Ser
TGA
-
¡û
>C181108655
CP024923
Alphaproteobacteria
Sphingomonas psychrotolerans Cra20 [CP024923]
1020902
1020813
-
Ser
TGA
-
¡û
>W141779840
JOOE01000001
Alphaproteobacteria
Sphingomonas sp. UNC305MFCol5.2 [JOOE]
246008
246097
+
Ser
TGA
[ENA]
¡û
>W1911398118
NWMW01000001
Alphaproteobacteria
Sphingomonas spermidinifaciens 9NM-10 [NWMW]
194463
194374
-
Ser
TGA
[ENA]
¡û
>W1911411145
NWUF01000008
Alphaproteobacteria
Rhizorhabdus dicambivorans Ndbn-20m [NWUF]
133927
133838
-
Ser
TGA
[ENA]
¡û
>W1911783348
QXTF01000001
Alphaproteobacteria
Sphingomonas edaphi DAC4 [QXTF]
198498
198587
+
Ser
TGA
[ENA]
¡û
>SRA1003859
SRR002327.238762
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
97
186
+
Ser
TGA
[SRA]
>W1810538531
QDFY01000001
Alphaproteobacteria
Sphingosinicella terrae KCTC 52780 [QDFY]
662797
662708
-
Ser
TGA
[ENA]
¡û
>W1511581096
LARW01000050
Alphaproteobacteria
Sphingomonas sp. SRS2 [LARW]
28595
28506
-
Ser
TGA
[ENA]
¡û
>W1610076684
BCYY01000002
Alphaproteobacteria
Sphingomonas pituitosa NBRC 102491 [BCYY]
77925
78014
+
Ser
TGA
[ENA]
¡û
>W1610729505
LMIB01000001
Alphaproteobacteria
Sphingomonas sp. Root710 [LMIB]
867012
867101
+
Ser
TGA
[ENA]
¡û
>W1610730463
LMIV01000001
Alphaproteobacteria
Sphingomonas sp. Root241 [LMIV]
1503154
1503065
-
Ser
TGA
[ENA]
¡û
>WENV077898
AAFX01120634
Soil microbial communities from Minnesota Farm
297
388
+
Ser
TGA
[ENA]
>W1710074373
BCYY01000002
Alphaproteobacteria
Sphingomonas pituitosa NBRC 102491 [BCYY]
77925
78014
+
Ser
TGA
[ENA]
¡û
>W1710743466
LGVA01000010
Alphaproteobacteria
Sphingomonas sp. Ndbn-20 [LGVA]
133850
133761
-
Ser
TGA
[ENA]
¡û
Identical group No.49651 (20 seq.)
>W1711421698
MHZQ01000247
Gammaproteobacteria
Rhodanobacter sp. RIFOXYA1_FULL_67_6 [MHZQ]
2128
2217
+
Ser
TGA
[ENA]
¡û
>W1711751314
MUNQ01000016
Gammaproteobacteria
Rhodanobacter sp. C05 [MUNQ]
129078
128989
-
Ser
TGA
[ENA]
¡û
>W1711751356
MUNR01000012
Gammaproteobacteria
Rhodanobacter sp. C01 [MUNR]
62575
62664
+
Ser
TGA
[ENA]
¡û
>W1711751485
MUNU01000014
Gammaproteobacteria
Rhodanobacter sp. B05 [MUNU]
208838
208749
-
Ser
TGA
[ENA]
¡û
>W1711751519
MUNV01000008
Gammaproteobacteria
Rhodanobacter sp. B04 [MUNV]
81515
81604
+
Ser
TGA
[ENA]
¡û
>C171063381
CP017480
Gammaproteobacteria
Luteibacter rhizovicinus DSM 16549 LJ96 [CP017480]
4398748
4398659
-
Ser
TGA
-
¡û
>W141820718
JQNB01000001
Gammaproteobacteria
Luteibacter sp. 9135 [JQNB]
3663577
3663488
-
Ser
TGA
[ENA]
¡û
>W141820796
JQND01000001
Gammaproteobacteria
Luteibacter sp. 9145 [JQND]
2023342
2023431
+
Ser
TGA
[ENA]
¡û
>W141821291
JQNL01000001
Gammaproteobacteria
Luteibacter sp. 9143a 9143 [JQNL]
343949
343860
-
Ser
TGA
[ENA]
¡û
>W1910729325
MGYJ01000090
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_63_22 [MGYJ]
81105
81016
-
Ser
TGA
[ENA]
¡û
>W1810071369
PEER01000009
Gammaproteobacteria
Rhodanobacter sp. TND4EH1 [PEER]
845373
845284
-
Ser
TGA
[ENA]
¡û
>SRA1003339
SRR002326.400847
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
133
44
-
Ser
TGA
[SRA]
>W1810477557
QAOX01000002
Gammaproteobacteria
Luteibacter sp. OK325 [QAOX]
790984
790895
-
Ser
TGA
[ENA]
¡û
>W1511305105
JPLB01000029
Gammaproteobacteria
Luteibacter rhizovicinus DSM 16549 [JPLB]
5171
5260
+
Ser
TGA
[ENA]
¡û
>W1511305251
JPLD01000156
Gammaproteobacteria
Xanthomonas hyacinthi DSM 19077 [JPLD]
11998
11909
-
Ser
TGA
[ENA]
¡û
>W1511433921
JUHO01000001
Gammaproteobacteria
Luteibacter sp. 9133 [JUHO]
2413450
2413361
-
Ser
TGA
[ENA]
¡û
>W1610616791
LGRQ01000293
Gammaproteobacteria
Luteibacter rhizovicinus [LGRQ]
4233
4322
+
Ser
TGA
[ENA]
¡û
>W1710575660
FOZI01000003
Gammaproteobacteria
Dyella sp. OK004 [FOZI]
24279
24368
+
Ser
TGA
[ENA]
¡û
>W1710603040
FUYT01000001
Gammaproteobacteria
Luteibacter sp. 22Crub2.1 [FUYT]
341622
341533
-
Ser
TGA
[ENA]
¡û
>W1710742130
LGRQ01000293
Gammaproteobacteria
Luteibacter rhizovicinus [LGRQ]
4233
4322
+
Ser
TGA
[ENA]
¡û
Identical group No.50014 (6 seq.)
>W1710892760
LNEC01000010
Alphaproteobacteria
Bradyrhizobiaceae bacterium Ga0074131 [LNEC]
222133
222044
-
Ser
TGA
[ENA]
¡û
>W131226915
AUES01000047
Alphaproteobacteria
Bradyrhizobium sp. URHA0002 [AUES]
2362
2273
-
Ser
TGA
[ENA]
¡û
>WENV170709769
LNFM01000681
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
12729
12640
-
Ser
TGA
[ENA]
¢þ
>SRA1002845
SRR002326.55311
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
104
15
-
Ser
TGA
[SRA]
>W1610753026
LNEC01000010
Alphaproteobacteria
Bradyrhizobiaceae bacterium Ga0074131 [LNEC]
222133
222044
-
Ser
TGA
[ENA]
¡û
>W1710536635
FNTI01000001
Alphaproteobacteria
Bradyrhizobium lablabi [FNTI]
7619799
7619888
+
Ser
TGA
[ENA]
¡û
Identical group No.52721 (2 seq.)
>SRA1002014
SRR001308.184878
Metagenomic characterization of a wastewater treatment plant (SRP000180)
125
36
-
Ser
TGA
[SRA]
>SRA1003863
SRR002327.242368
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
216
127
-
Ser
TGA
[SRA]
Identical group No.52727 (1 seq.)
>SRA1002830
SRR002326.44205
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
214
125
-
Ser
TGA
[SRA]
Identical group No.52732 (1 seq.)
>SRA1003096
SRR002326.196606
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
140
229
+
Ser
TGA
[SRA]
Identical group No.52736 (2 seq.)
>WENV180266572
OBEQ011767619
[OBEQ] groundwater metagenome; groundwater
334
423
+
Ser
TGA
[ENA]
¢þ
>SRA1003271
SRR002326.354467
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
110
21
-
Ser
TGA
[SRA]
Identical group No.52737 (1 seq.)
>SRA1003322
SRR002326.388837
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
157
68
-
Ser
TGA
[SRA]
Identical group No.52738 (2 seq.)
>W141730274
JNIF01000003
Acidobacteriota
Bryobacter aggregatus MPL3 [JNIF]
159854
159765
-
Ser
TGA
[ENA]
¡û
>SRA1003383
SRR002326.425703
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
92
3
-
Ser
TGA
[SRA]
Identical group No.56652 (3 seq.)
>SRA1003542
SRR002327.12351
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
41
128
+
Ser
TGA
[SRA]
>SRA1003552
SRR002327.21950
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
41
128
+
Ser
TGA
[SRA]
>SRA1003579
SRR002327.42508
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
41
128
+
Ser
TGA
[SRA]
Identical group No.56654 (1 seq.)
>SRA1003786
SRR002327.184317
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
233
144
-
Ser
TGA
[SRA]
Identical group No.56659 (3 seq.)
>WENV181388415
OFRM01015105
[OFRM] wastewater metagenome; Exp Tend VB 0WW
761
850
+
Ser
TGA
[ENA]
¢þ
>WENV181399582
OFSE01045611
[OFSE] wastewater metagenome; Exp Tend VB 50WW
6
95
+
Ser
TGA
[ENA]
¢þ
>SRA1003846
SRR002327.232542
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
161
72
-
Ser
TGA
[SRA]
Identical group No.63109 (1 seq.)
>SRA1003879
SRR002328.3824
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
171
260
+
Ser
TGA
[SRA]
Identical group No.63112 (1 seq.)
>SRA1004218
SRR002328.205746
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
200
111
-
Ser
TGA
[SRA]
Identical group No.63114 (1 seq.)
>SRA1004317
SRR002328.271013
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
151
240
+
Ser
TGA
[SRA]
Identical group No.91525 (17 seq.)
>W1710870303
LMKK01000001
Actinomycetota
Agreia sp. Leaf210 [LMKK]
1056621
1056534
-
Ser
TGA
[ENA]
¡û
>W1710872328
LMLX01000001
Actinomycetota
Agreia sp. Leaf244 [LMLX]
593429
593344
-
Pseudo
TGA
[ENA]
¡û
>W1710873960
LMNF01000001
Actinomycetota
Agreia sp. Leaf283 [LMNF]
598898
598813
-
Pseudo
TGA
[ENA]
¡û
>W1710875733
LMOQ01000001
Actinomycetota
Agreia sp. Leaf335 [LMOQ]
209419
209506
+
Ser
TGA
[ENA]
¡û
>WENV180017034
FSWJ01000677
[FSWJ] metagenome; soil
3488
3403
-
Ser
TGA
[ENA]
¢þ
>WENV180024116
FTIF01050752
[FTIF] metagenome; soil
331
416
+
Ser
TGA
[ENA]
¢þ
>W1810281996
PSXW01000013
Actinomycetota
Clavibacter michiganensis AY2B8 [PSXW]
9057
8970
-
Ser
TGA
[ENA]
¡û
>W1810577907
QEOP01000001
Actinomycetota
Amnibacterium flavum M8JJ-5 [QEOP]
721058
721143
+
Ser
TGA
[ENA]
¡û
>SRA1003138
SRR002326.234438
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
233
148
-
Ser
TGA
[SRA]
>W1511524519
JYFC01000006
Actinomycetota
Agreia bicolorata VKM Ac-1804 [JYFC]
23584
23671
+
Ser
TGA
[ENA]
¡û
>W1610732649
LMKK01000001
Actinomycetota
Agreia sp. Leaf210 [LMKK]
1056621
1056534
-
Ser
TGA
[ENA]
¡û
>W1610734674
LMLX01000001
Actinomycetota
Agreia sp. Leaf244 [LMLX]
593429
593344
-
Pseudo
TGA
[ENA]
¡û
>W1610736306
LMNF01000001
Actinomycetota
Agreia sp. Leaf283 [LMNF]
598898
598813
-
Pseudo
TGA
[ENA]
¡û
>W1610738079
LMOQ01000001
Actinomycetota
Agreia sp. Leaf335 [LMOQ]
209419
209506
+
Ser
TGA
[ENA]
¡û
>W1710602478
FUYG01000001
Actinomycetota
Agreia bicolorata VKM Ac-2052 [FUYG]
242292
242379
+
Ser
TGA
[ENA]
¡û
>W1710608509
FXAY01000001
Actinomycetota
Agreia pratensis [FXAY]
865452
865365
-
Ser
TGA
[ENA]
¡û
>W1710609318
FXWI01000004
Actinomycetota
Agreia sp. VKM Ac-1783 [FXWI]
63098
63011
-
Ser
TGA
[ENA]
¡û
Identical group No.93352 (2 seq.)
>SRA1002942
SRR002326.113689
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
285
200
-
Ser
TGA
[SRA]
>SRA1003387
SRR002326.430603
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
232
147
-
Ser
TGA
[SRA]
Identical group No.93353 (1 seq.)
>SRA1002979
SRR002326.132558
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
175
88
-
Ser
TGA
[SRA]
Identical group No.93354 (2 seq.)
>W1711751395
MUNS01000025
Betaproteobacteria
Polaromonas sp. C04 [MUNS]
76821
76734
-
Ser
TGA
[ENA]
¡û
>SRA1003034
SRR002326.163161
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
91
4
-
Ser
TGA
[SRA]
Identical group No.93362 (2 seq.)
>SRA1003466
SRR002326.485946
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
116
29
-
Ser
TGA
[SRA]
>SRA1003515
SRR002326.518153
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
117
30
-
Ser
TGA
[SRA]
Identical group No.93371 (3 seq.)
>SRA1003343
SRR002326.402396
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
41
126
+
Ser
TGA
[SRA]
>SRA1004013
SRR002328.96127
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
273
188
-
Ser
TGA
[SRA]
>SRA1004025
SRR002328.101447
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
102
17
-
Ser
TGA
[SRA]
Identical group No.97226 (4 seq.)
>W1711179137
LWHJ01000027
Bacteroidota
Pedobacter psychrophilus CCM 8644 [LWHJ]
395304
395219
-
Ser
TGA
[ENA]
¡û
>W141027932
AKZJ01000009
Bacteroidota
Pedobacter arcticus A12 [AKZJ]
39982
40067
+
Ser
TGA
[ENA]
¡û
>SRA1003609
SRR002327.66935
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
259
174
-
Ser
TGA
[SRA]
>W1610987089
LWHJ01000027
Bacteroidota
Pedobacter psychrophilus CCM 8644 [LWHJ]
395304
395219
-
Ser
TGA
[ENA]
¡û
Identical group No.97227 (1 seq.)
>SRA1003650
SRR002327.94682
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
163
78
-
Ser
TGA
[SRA]
Identical group No.103397 (1 seq.)
>SRA1004077
SRR002328.135231
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
73
158
+
Ser
TGA
[SRA]
Identical group No.123097 (1 seq.)
>SRA1003519
SRR002326.521856
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
231
147
-
Ser
TGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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