tRNA genes clustered and arranged according to each identical group

The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)

Anticodon = TGA

HIT: 29 Group(s).
Download Sequence Representative sequence of each cluster
View ClustalW result
Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.9238 (1 seq.)
>SRA1003064 SRR002326.178258 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 148 241 + Ser TGA [SRA]
Identical group No.22541 (1 seq.)
>SRA1002852 SRR002326.59338 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 241 150 - Ser TGA [SRA]
Identical group No.26596 (1 seq.)
>SRA1004084 SRR002328.137604 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 125 216 + Ser TGA [SRA]
Identical group No.40630 (1 seq.)
>SRA1003888 SRR002328.11111 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 56 146 + Ser TGA [SRA]
Identical group No.48650 (29 seq.)
>W1710867159 LMIB01000001 Alphaproteobacteria Sphingomonas sp. Root710 [LMIB] 867012 867101 + Ser TGA [ENA] ¡û
>W1710868117 LMIV01000001 Alphaproteobacteria Sphingomonas sp. Root241 [LMIV] 1503154 1503065 - Ser TGA [ENA] ¡û
>W1711353149 MDDS01000081 Alphaproteobacteria Sphingomonas turrisvirgatae MCT13 [MDDS] 62388 62299 - Ser TGA [ENA] ¡û
>W1711501465 MKRR01000111 Alphaproteobacteria Sphingomonas sp. 66-10 [MKRR] 45490 45579 + Ser TGA [ENA] ¡û
>C171095083 CP019511 Alphaproteobacteria Sphingomonas sp. LM7 [CP019511] 985736 985647 - Ser TGA - ¡û
>W131237441 AUOL01000183 Alphaproteobacteria Sphingomonas sp. JGI 0001003-D23 [AUOL] 1264 1175 - Ser TGA [ENA] ¡û
>WENV180020497 FTCZ01004884 [FTCZ] metagenome; soil 1673 1762 + Ser TGA [ENA] ¢þ
>WENV180022433 FTGF01000331 [FTGF] metagenome; soil 657 746 + Ser TGA [ENA] ¢þ
>WENV181402329 OFTY01000637 [OFTY] sludge metagenome; sludge 14005 14094 + Ser TGA [ENA] ¢þ
>WENV170002837 AGTN01144116 [AGTN] bioreactor metagenome; poplar biomass 388 299 - Ser TGA [ENA] ¢þ
>WENV170010542 APMI01019919 [APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater 9423 9512 + Ser TGA [ENA] ¢þ
>WENV170564977 CZQE01000026 [CZQE] hydrothermal vent metagenome; ocean water 6739 6650 - Ser TGA [ENA] ¢þ
>WENV170574205 FLYM01013498 [FLYM] hot springs metagenome; Sediment 1489 1400 - Ser TGA [ENA] ¢þ
>W141452327 JFBW01000002 Alphaproteobacteria Sphingomonas jaspsi DSM 18422 [JFBW] 1711329 1711240 - Ser TGA [ENA] ¡û
>C181081601 CP023449 Alphaproteobacteria Rhizorhabdus dicambivorans Ndbn-20 [CP023449] 2833731 2833820 + Ser TGA - ¡û
>C181108655 CP024923 Alphaproteobacteria Sphingomonas psychrotolerans Cra20 [CP024923] 1020902 1020813 - Ser TGA - ¡û
>W141779840 JOOE01000001 Alphaproteobacteria Sphingomonas sp. UNC305MFCol5.2 [JOOE] 246008 246097 + Ser TGA [ENA] ¡û
>W1911398118 NWMW01000001 Alphaproteobacteria Sphingomonas spermidinifaciens 9NM-10 [NWMW] 194463 194374 - Ser TGA [ENA] ¡û
>W1911411145 NWUF01000008 Alphaproteobacteria Rhizorhabdus dicambivorans Ndbn-20m [NWUF] 133927 133838 - Ser TGA [ENA] ¡û
>W1911783348 QXTF01000001 Alphaproteobacteria Sphingomonas edaphi DAC4 [QXTF] 198498 198587 + Ser TGA [ENA] ¡û
>SRA1003859 SRR002327.238762 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 97 186 + Ser TGA [SRA]
>W1810538531 QDFY01000001 Alphaproteobacteria Sphingosinicella terrae KCTC 52780 [QDFY] 662797 662708 - Ser TGA [ENA] ¡û
>W1511581096 LARW01000050 Alphaproteobacteria Sphingomonas sp. SRS2 [LARW] 28595 28506 - Ser TGA [ENA] ¡û
>W1610076684 BCYY01000002 Alphaproteobacteria Sphingomonas pituitosa NBRC 102491 [BCYY] 77925 78014 + Ser TGA [ENA] ¡û
>W1610729505 LMIB01000001 Alphaproteobacteria Sphingomonas sp. Root710 [LMIB] 867012 867101 + Ser TGA [ENA] ¡û
>W1610730463 LMIV01000001 Alphaproteobacteria Sphingomonas sp. Root241 [LMIV] 1503154 1503065 - Ser TGA [ENA] ¡û
>WENV077898 AAFX01120634 Soil microbial communities from Minnesota Farm 297 388 + Ser TGA [ENA]
>W1710074373 BCYY01000002 Alphaproteobacteria Sphingomonas pituitosa NBRC 102491 [BCYY] 77925 78014 + Ser TGA [ENA] ¡û
>W1710743466 LGVA01000010 Alphaproteobacteria Sphingomonas sp. Ndbn-20 [LGVA] 133850 133761 - Ser TGA [ENA] ¡û
Identical group No.49651 (20 seq.)
>W1711421698 MHZQ01000247 Gammaproteobacteria Rhodanobacter sp. RIFOXYA1_FULL_67_6 [MHZQ] 2128 2217 + Ser TGA [ENA] ¡û
>W1711751314 MUNQ01000016 Gammaproteobacteria Rhodanobacter sp. C05 [MUNQ] 129078 128989 - Ser TGA [ENA] ¡û
>W1711751356 MUNR01000012 Gammaproteobacteria Rhodanobacter sp. C01 [MUNR] 62575 62664 + Ser TGA [ENA] ¡û
>W1711751485 MUNU01000014 Gammaproteobacteria Rhodanobacter sp. B05 [MUNU] 208838 208749 - Ser TGA [ENA] ¡û
>W1711751519 MUNV01000008 Gammaproteobacteria Rhodanobacter sp. B04 [MUNV] 81515 81604 + Ser TGA [ENA] ¡û
>C171063381 CP017480 Gammaproteobacteria Luteibacter rhizovicinus DSM 16549 LJ96 [CP017480] 4398748 4398659 - Ser TGA - ¡û
>W141820718 JQNB01000001 Gammaproteobacteria Luteibacter sp. 9135 [JQNB] 3663577 3663488 - Ser TGA [ENA] ¡û
>W141820796 JQND01000001 Gammaproteobacteria Luteibacter sp. 9145 [JQND] 2023342 2023431 + Ser TGA [ENA] ¡û
>W141821291 JQNL01000001 Gammaproteobacteria Luteibacter sp. 9143a 9143 [JQNL] 343949 343860 - Ser TGA [ENA] ¡û
>W1910729325 MGYJ01000090 Gammaproteobacteria Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_63_22 [MGYJ] 81105 81016 - Ser TGA [ENA] ¡û
>W1810071369 PEER01000009 Gammaproteobacteria Rhodanobacter sp. TND4EH1 [PEER] 845373 845284 - Ser TGA [ENA] ¡û
>SRA1003339 SRR002326.400847 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 133 44 - Ser TGA [SRA]
>W1810477557 QAOX01000002 Gammaproteobacteria Luteibacter sp. OK325 [QAOX] 790984 790895 - Ser TGA [ENA] ¡û
>W1511305105 JPLB01000029 Gammaproteobacteria Luteibacter rhizovicinus DSM 16549 [JPLB] 5171 5260 + Ser TGA [ENA] ¡û
>W1511305251 JPLD01000156 Gammaproteobacteria Xanthomonas hyacinthi DSM 19077 [JPLD] 11998 11909 - Ser TGA [ENA] ¡û
>W1511433921 JUHO01000001 Gammaproteobacteria Luteibacter sp. 9133 [JUHO] 2413450 2413361 - Ser TGA [ENA] ¡û
>W1610616791 LGRQ01000293 Gammaproteobacteria Luteibacter rhizovicinus [LGRQ] 4233 4322 + Ser TGA [ENA] ¡û
>W1710575660 FOZI01000003 Gammaproteobacteria Dyella sp. OK004 [FOZI] 24279 24368 + Ser TGA [ENA] ¡û
>W1710603040 FUYT01000001 Gammaproteobacteria Luteibacter sp. 22Crub2.1 [FUYT] 341622 341533 - Ser TGA [ENA] ¡û
>W1710742130 LGRQ01000293 Gammaproteobacteria Luteibacter rhizovicinus [LGRQ] 4233 4322 + Ser TGA [ENA] ¡û
Identical group No.50014 (6 seq.)
>W1710892760 LNEC01000010 Alphaproteobacteria Bradyrhizobiaceae bacterium Ga0074131 [LNEC] 222133 222044 - Ser TGA [ENA] ¡û
>W131226915 AUES01000047 Alphaproteobacteria Bradyrhizobium sp. URHA0002 [AUES] 2362 2273 - Ser TGA [ENA] ¡û
>WENV170709769 LNFM01000681 [LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant 12729 12640 - Ser TGA [ENA] ¢þ
>SRA1002845 SRR002326.55311 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 104 15 - Ser TGA [SRA]
>W1610753026 LNEC01000010 Alphaproteobacteria Bradyrhizobiaceae bacterium Ga0074131 [LNEC] 222133 222044 - Ser TGA [ENA] ¡û
>W1710536635 FNTI01000001 Alphaproteobacteria Bradyrhizobium lablabi [FNTI] 7619799 7619888 + Ser TGA [ENA] ¡û
Identical group No.52721 (2 seq.)
>SRA1002014 SRR001308.184878 Metagenomic characterization of a wastewater treatment plant (SRP000180) 125 36 - Ser TGA [SRA]
>SRA1003863 SRR002327.242368 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 216 127 - Ser TGA [SRA]
Identical group No.52727 (1 seq.)
>SRA1002830 SRR002326.44205 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 214 125 - Ser TGA [SRA]
Identical group No.52732 (1 seq.)
>SRA1003096 SRR002326.196606 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 140 229 + Ser TGA [SRA]
Identical group No.52736 (2 seq.)
>WENV180266572 OBEQ011767619 [OBEQ] groundwater metagenome; groundwater 334 423 + Ser TGA [ENA] ¢þ
>SRA1003271 SRR002326.354467 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 110 21 - Ser TGA [SRA]
Identical group No.52737 (1 seq.)
>SRA1003322 SRR002326.388837 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 157 68 - Ser TGA [SRA]
Identical group No.52738 (2 seq.)
>W141730274 JNIF01000003 Acidobacteriota Bryobacter aggregatus MPL3 [JNIF] 159854 159765 - Ser TGA [ENA] ¡û
>SRA1003383 SRR002326.425703 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 92 3 - Ser TGA [SRA]
Identical group No.56652 (3 seq.)
>SRA1003542 SRR002327.12351 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 41 128 + Ser TGA [SRA]
>SRA1003552 SRR002327.21950 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 41 128 + Ser TGA [SRA]
>SRA1003579 SRR002327.42508 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 41 128 + Ser TGA [SRA]
Identical group No.56654 (1 seq.)
>SRA1003786 SRR002327.184317 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 233 144 - Ser TGA [SRA]
Identical group No.56659 (3 seq.)
>WENV181388415 OFRM01015105 [OFRM] wastewater metagenome; Exp Tend VB 0WW 761 850 + Ser TGA [ENA] ¢þ
>WENV181399582 OFSE01045611 [OFSE] wastewater metagenome; Exp Tend VB 50WW 6 95 + Ser TGA [ENA] ¢þ
>SRA1003846 SRR002327.232542 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 161 72 - Ser TGA [SRA]
Identical group No.63109 (1 seq.)
>SRA1003879 SRR002328.3824 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 171 260 + Ser TGA [SRA]
Identical group No.63112 (1 seq.)
>SRA1004218 SRR002328.205746 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 200 111 - Ser TGA [SRA]
Identical group No.63114 (1 seq.)
>SRA1004317 SRR002328.271013 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 151 240 + Ser TGA [SRA]
Identical group No.91525 (17 seq.)
>W1710870303 LMKK01000001 Actinomycetota Agreia sp. Leaf210 [LMKK] 1056621 1056534 - Ser TGA [ENA] ¡û
>W1710872328 LMLX01000001 Actinomycetota Agreia sp. Leaf244 [LMLX] 593429 593344 - Pseudo TGA [ENA] ¡û
>W1710873960 LMNF01000001 Actinomycetota Agreia sp. Leaf283 [LMNF] 598898 598813 - Pseudo TGA [ENA] ¡û
>W1710875733 LMOQ01000001 Actinomycetota Agreia sp. Leaf335 [LMOQ] 209419 209506 + Ser TGA [ENA] ¡û
>WENV180017034 FSWJ01000677 [FSWJ] metagenome; soil 3488 3403 - Ser TGA [ENA] ¢þ
>WENV180024116 FTIF01050752 [FTIF] metagenome; soil 331 416 + Ser TGA [ENA] ¢þ
>W1810281996 PSXW01000013 Actinomycetota Clavibacter michiganensis AY2B8 [PSXW] 9057 8970 - Ser TGA [ENA] ¡û
>W1810577907 QEOP01000001 Actinomycetota Amnibacterium flavum M8JJ-5 [QEOP] 721058 721143 + Ser TGA [ENA] ¡û
>SRA1003138 SRR002326.234438 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 233 148 - Ser TGA [SRA]
>W1511524519 JYFC01000006 Actinomycetota Agreia bicolorata VKM Ac-1804 [JYFC] 23584 23671 + Ser TGA [ENA] ¡û
>W1610732649 LMKK01000001 Actinomycetota Agreia sp. Leaf210 [LMKK] 1056621 1056534 - Ser TGA [ENA] ¡û
>W1610734674 LMLX01000001 Actinomycetota Agreia sp. Leaf244 [LMLX] 593429 593344 - Pseudo TGA [ENA] ¡û
>W1610736306 LMNF01000001 Actinomycetota Agreia sp. Leaf283 [LMNF] 598898 598813 - Pseudo TGA [ENA] ¡û
>W1610738079 LMOQ01000001 Actinomycetota Agreia sp. Leaf335 [LMOQ] 209419 209506 + Ser TGA [ENA] ¡û
>W1710602478 FUYG01000001 Actinomycetota Agreia bicolorata VKM Ac-2052 [FUYG] 242292 242379 + Ser TGA [ENA] ¡û
>W1710608509 FXAY01000001 Actinomycetota Agreia pratensis [FXAY] 865452 865365 - Ser TGA [ENA] ¡û
>W1710609318 FXWI01000004 Actinomycetota Agreia sp. VKM Ac-1783 [FXWI] 63098 63011 - Ser TGA [ENA] ¡û
Identical group No.93352 (2 seq.)
>SRA1002942 SRR002326.113689 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 285 200 - Ser TGA [SRA]
>SRA1003387 SRR002326.430603 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 232 147 - Ser TGA [SRA]
Identical group No.93353 (1 seq.)
>SRA1002979 SRR002326.132558 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 175 88 - Ser TGA [SRA]
Identical group No.93354 (2 seq.)
>W1711751395 MUNS01000025 Betaproteobacteria Polaromonas sp. C04 [MUNS] 76821 76734 - Ser TGA [ENA] ¡û
>SRA1003034 SRR002326.163161 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 91 4 - Ser TGA [SRA]
Identical group No.93362 (2 seq.)
>SRA1003466 SRR002326.485946 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 116 29 - Ser TGA [SRA]
>SRA1003515 SRR002326.518153 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 117 30 - Ser TGA [SRA]
Identical group No.93371 (3 seq.)
>SRA1003343 SRR002326.402396 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 41 126 + Ser TGA [SRA]
>SRA1004013 SRR002328.96127 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 273 188 - Ser TGA [SRA]
>SRA1004025 SRR002328.101447 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 102 17 - Ser TGA [SRA]
Identical group No.97226 (4 seq.)
>W1711179137 LWHJ01000027 Bacteroidota Pedobacter psychrophilus CCM 8644 [LWHJ] 395304 395219 - Ser TGA [ENA] ¡û
>W141027932 AKZJ01000009 Bacteroidota Pedobacter arcticus A12 [AKZJ] 39982 40067 + Ser TGA [ENA] ¡û
>SRA1003609 SRR002327.66935 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 259 174 - Ser TGA [SRA]
>W1610987089 LWHJ01000027 Bacteroidota Pedobacter psychrophilus CCM 8644 [LWHJ] 395304 395219 - Ser TGA [ENA] ¡û
Identical group No.97227 (1 seq.)
>SRA1003650 SRR002327.94682 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 163 78 - Ser TGA [SRA]
Identical group No.103397 (1 seq.)
>SRA1004077 SRR002328.135231 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 73 158 + Ser TGA [SRA]
Identical group No.123097 (1 seq.)
>SRA1003519 SRR002326.521856 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 231 147 - Ser TGA [SRA]
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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